Information for 3-TATAAAGSCS (Motif 3)

G A C T C G T A C G A T G T C A C G T A C T G A T C A G T A C G T A G C A T C G
Reverse Opposite:
T A G C A T C G A T G C A G T C A G C T G C A T C A G T G C T A G C A T C T G A
p-value:1e-24
log p-value:-5.618e+01
Information Content per bp:1.598
Number of Target Sequences with motif202.0
Percentage of Target Sequences with motif22.95%
Number of Background Sequences with motif4760.5
Percentage of Background Sequences with motif10.78%
Average Position of motif in Targets49.9 +/- 21.6bp
Average Position of motif in Background49.6 +/- 33.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.32
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBP/MA0108.2/Jaspar

Match Rank:1
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-TATAAAGSCS----
GTATAAAAGGCGGGG
 A C G T G A C T C G T A C G A T G T C A C G T A C T G A T C A G T A C G T A G C A T C G A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-TATAAAGSCS----
GTATAAAAGGCGGGG
 A C G T G A C T C G T A C G A T G T C A C G T A C T G A T C A G T A C G T A G C A T C G A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---TATAAAGSCS
CCTTTTATAGNC-
 A C G T A C G T A C G T G A C T C G T A C G A T G T C A C G T A C T G A T C A G T A C G T A G C A T C G
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TATAAAGSCS
NGYCATAAAWCH-
 A C G T A C G T A C G T G A C T C G T A C G A T G T C A C G T A C T G A T C A G T A C G T A G C A T C G
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TATAAAGSCS
GCAATAAAA---
 A C G T A C G T G A C T C G T A C G A T G T C A C G T A C T G A T C A G T A C G T A G C A T C G
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TATAAAGSCS
AAGCCATAAAA---
 A C G T A C G T A C G T A C G T G A C T C G T A C G A T G T C A C G T A C T G A T C A G T A C G T A G C A T C G
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T

PB0080.1_Tbp_1/Jaspar

Match Rank:7
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------TATAAAGSCS
NANTTATATATAANGN
 A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A C G A T G T C A C G T A C T G A T C A G T A C G T A G C A T C G
A G C T G T C A C A G T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A C G T A C T A G C T G A

PB0163.1_Six6_2/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TATAAAGSCS--
ANNNGGATATATCCNNN
 A C G T A C G T A C G T A C G T A C G T G A C T C G T A C G A T G T C A C G T A C T G A T C A G T A C G T A G C A T C G A C G T A C G T
G T C A C T A G C T A G A G T C T C A G C A T G T C G A A C G T T G C A A G C T C T G A A G C T T G A C A T G C T A G C G C T A A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TATAAAGSCS
GTCATAAAAN--
 A C G T A C G T G A C T C G T A C G A T G T C A C G T A C T G A T C A G T A C G T A G C A T C G
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TATAAAGSCS
CCAATAAAAA--
 A C G T A C G T G A C T C G T A C G A T G T C A C G T A C T G A T C A G T A C G T A G C A T C G
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T