Information for 6-GAGACCAAAG (Motif 11)

A C T G C G T A C A T G C G T A T G A C A G T C G T C A G T C A C T G A C A T G
Reverse Opposite:
G T A C A G C T A C G T A C G T A C T G A C T G C G A T G T A C A C G T A G T C
p-value:1e-10
log p-value:-2.444e+01
Information Content per bp:1.842
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.53%
Number of Background Sequences with motif177.2
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets47.5 +/- 27.9bp
Average Position of motif in Background45.7 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LEF1/MA0768.1/Jaspar

Match Rank:1
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GAGACCAAAG----
AAAGATCAAAGGGTT
 A C G T A C T G C G T A C A T G C G T A T G A C A G T C G T C A G T C A C T G A C A T G A C G T A C G T A C G T A C G T
T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:2
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GAGACCAAAG---
-ACATCAAAGGNA
 A C T G C G T A C A T G C G T A T G A C A G T C G T C A G T C A C T G A C A T G A C G T A C G T A C G T
A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

Tcf7/MA0769.1/Jaspar

Match Rank:3
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GAGACCAAAG-
AAAGATCAAAGG
 A C G T A C T G C G T A C A T G C G T A T G A C A G T C G T C A G T C A C T G A C A T G A C G T
C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

PB0040.1_Lef1_1/Jaspar

Match Rank:4
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GAGACCAAAG-----
NANAGATCAAAGGGNNN
 A C G T A C G T A C T G C G T A C A T G C G T A T G A C A G T C G T C A G T C A C T G A C A T G A C G T A C G T A C G T A C G T A C G T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:5
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GAGACCAAAG-----
NNNAGATCAAAGGANNN
 A C G T A C G T A C T G C G T A C A T G C G T A T G A C A G T C G T C A G T C A C T G A C A T G A C G T A C G T A C G T A C G T A C G T
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

TCF7L2/MA0523.1/Jaspar

Match Rank:6
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GAGACCAAAG---
AAAGATCAAAGGAA
 A C G T A C T G C G T A C A T G C G T A T G A C A G T C G T C A G T C A C T G A C A T G A C G T A C G T A C G T
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GAGACCAAAG-
-ACATCAAAGG
 A C T G C G T A C A T G C G T A T G A C A G T C G T C A G T C A C T G A C A T G A C G T
A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

HNF4G/MA0484.1/Jaspar

Match Rank:8
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GAGACCAAAG----
AGAGTCCAAAGTCCA
 A C G T A C T G C G T A C A T G C G T A T G A C A G T C G T C A G T C A C T G A C A T G A C G T A C G T A C G T A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GAGACCAAAG-----
AGAAGAACAAAGGACTA
 A C G T A C G T A C T G C G T A C A T G C G T A T G A C A G T C G T C A G T C A C T G A C A T G A C G T A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0082.1_Tcf3_1/Jaspar

Match Rank:10
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GAGACCAAAG-----
TATAGATCAAAGGAAAA
 A C G T A C G T A C T G C G T A C A T G C G T A T G A C A G T C G T C A G T C A C T G A C A T G A C G T A C G T A C G T A C G T A C G T
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A