Information for 3-TWTAWAARGG (Motif 3)

A G C T G C T A A C G T C T G A C G T A C T G A C T G A C T A G T A C G T A C G
Reverse Opposite:
A T G C A T G C G A T C G A C T A G C T G C A T G A C T G T C A C G A T T C G A
p-value:1e-19
log p-value:-4.521e+01
Information Content per bp:1.663
Number of Target Sequences with motif89.0
Percentage of Target Sequences with motif9.40%
Number of Background Sequences with motif1306.3
Percentage of Background Sequences with motif3.03%
Average Position of motif in Targets52.2 +/- 22.0bp
Average Position of motif in Background48.9 +/- 35.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-TWTAWAARGG----
GTATAAAAGGCGGGG
 A C G T A G C T G C T A A C G T C T G A C G T A C T G A C T G A C T A G T A C G T A C G A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-TWTAWAARGG----
GTATAAAAGGCGGGG
 A C G T A G C T G C T A A C G T C T G A C G T A C T G A C T G A C T A G T A C G T A C G A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---TWTAWAARGG
GNCTATAAAAGG-
 A C G T A C G T A C G T A G C T G C T A A C G T C T G A C G T A C T G A C T G A C T A G T A C G T A C G
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T

PB0080.1_Tbp_1/Jaspar

Match Rank:4
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------TWTAWAARGG
NANTTATATATAANGN
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C T A A C G T C T G A C G T A C T G A C T G A C T A G T A C G T A C G
A G C T G T C A C A G T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A C G T A C T A G C T G A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TWTAWAARGG
NCYAATAAAA---
 A C G T A C G T A C G T A G C T G C T A A C G T C T G A C G T A C T G A C T G A C T A G T A C G T A C G
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TWTAWAARGG
TTTTATKRGG-
 A C G T A G C T G C T A A C G T C T G A C G T A C T G A C T G A C T A G T A C G T A C G
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TWTAWAARGG
NGYCATAAAWCH-
 A C G T A C G T A C G T A G C T G C T A A C G T C T G A C G T A C T G A C T G A C T A G T A C G T A C G
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TWTAWAARGG
CCATATATGG-
 A C G T A G C T G C T A A C G T C T G A C G T A C T G A C T G A C T A G T A C G T A C G
G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TWTAWAARGG
CCAATAAAAA--
 A C G T A C G T A G C T G C T A A C G T C T G A C G T A C T G A C T G A C T A G T A C G T A C G
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TWTAWAARGG
GCAATAAAA---
 A C G T A C G T A G C T G C T A A C G T C T G A C G T A C T G A C T G A C T A G T A C G T A C G
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T