Information for 14-CMAATCGCYK (Motif 20)

A T G C T G A C T C G A T C G A A C G T A T G C C T A G T A G C G A C T C A T G
Reverse Opposite:
G T A C C T G A A T C G G A T C T A C G T G C A A G C T A G C T A C T G T A C G
p-value:1e-10
log p-value:-2.397e+01
Information Content per bp:1.473
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif3.59%
Number of Background Sequences with motif393.2
Percentage of Background Sequences with motif0.91%
Average Position of motif in Targets42.4 +/- 27.7bp
Average Position of motif in Background47.1 +/- 38.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Gfi1/MA0038.1/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CMAATCGCYK
CAAATCACTG
 A T G C T G A C T C G A T C G A A C G T A T G C C T A G T A G C G A C T C A T G
A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CMAATCGCYK
AGCCAATCGG--
 A C G T A C G T A T G C T G A C T C G A T C G A A C G T A T G C C T A G T A G C G A C T C A T G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CMAATCGCYK-
-AAATCACTGC
 A T G C T G A C T C G A T C G A A C G T A T G C C T A G T A G C G A C T C A T G A C G T
A C G T T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C

Gfi1b/MA0483.1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CMAATCGCYK--
-AAATCACAGCA
 A T G C T G A C T C G A T C G A A C G T A T G C C T A G T A G C G A C T C A T G A C G T A C G T
A C G T T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A

NFYB/MA0502.1/Jaspar

Match Rank:5
Score:0.66
Offset:-7
Orientation:forward strand
Alignment:-------CMAATCGCYK
AAATGGACCAATCAG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C T G A C T C G A T C G A A C G T A T G C C T A G T A G C G A C T C A T G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CMAATCGCYK
GTTAATGGCC-
 A C G T A T G C T G A C T C G A T C G A A C G T A T G C C T A G T A G C G A C T C A T G
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T

VENTX/MA0724.1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CMAATCGCYK
CTAATCGNT-
 A T G C T G A C T C G A T C G A A C G T A T G C C T A G T A G C G A C T C A T G
G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CMAATCGCYK----
TGGACCAATCAGCACTCT
 A C G T A C G T A C G T A C G T A T G C T G A C T C G A T C G A A C G T A T G C C T A G T A G C G A C T C A T G A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

PH0007.1_Barx1/Jaspar

Match Rank:9
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CMAATCGCYK-
ATNNACTAATTACTTT
 A C G T A C G T A C G T A C G T A C G T A T G C T G A C T C G A T C G A A C G T A T G C C T A G T A G C G A C T C A T G A C G T
C G T A G C A T C A G T G A T C T C G A T A G C G A C T T G C A G T C A A C G T A C G T C T G A A T G C A G C T C A G T C A G T

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CMAATCGCYK
ACTAGCCAATCA---
 A C G T A C G T A C G T A C G T A C G T A T G C T G A C T C G A T C G A A C G T A T G C C T A G T A G C G A C T C A T G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T