Information for 5-CGKCGCGGAGAGATGA (Motif 5)

A G T C A C T G A C G T A T G C T C A G A G T C A T C G T C A G T C G A T C A G C G T A C A T G T C G A C A G T C A T G T C G A
Reverse Opposite:
A C G T G A T C G T C A A G C T G A T C C G A T A G T C A C G T A G T C T A G C T A C G A G T C A T C G T G C A A G T C C T A G
p-value:1e-13
log p-value:-3.183e+01
Information Content per bp:1.663
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.99%
Number of Background Sequences with motif54.1
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets50.3 +/- 26.4bp
Average Position of motif in Background48.6 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0202.1_Zfp410_2/Jaspar

Match Rank:1
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CGKCGCGGAGAGATGA
NNTNNGGGGCGGNGNGN---
 A C G T A C G T A C G T A C G T A G T C A C T G A C G T A T G C T C A G A G T C A T C G T C A G T C G A T C A G C G T A C A T G T C G A C A G T C A T G T C G A
C G T A C T G A C A G T C G A T G C A T T A C G A C T G T A C G A C T G T G A C T C A G C T A G C T A G C T A G C A G T C T A G T C G A A C G T A C G T A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:2
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CGKCGCGGAGAGATGA
-GCCGCGCAGTGCGT-
 A G T C A C T G A C G T A T G C T C A G A G T C A T C G T C A G T C G A T C A G C G T A C A T G T C G A C A G T C A T G T C G A
A C G T C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T A C G T

GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer

Match Rank:3
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----CGKCGCGGAGAGATGA
CNGCTGNNGNNNNCAGATAA
 A C G T A C G T A C G T A C G T A G T C A C T G A C G T A T G C T C A G A G T C A T C G T C A G T C G A T C A G C G T A C A T G T C G A C A G T C A T G T C G A
T G A C C T A G A C T G T A G C C G A T A C T G A T G C C A T G A T C G A T C G A T C G T A G C C T G A T A G C G C T A A C T G C G T A A G C T C G T A C T G A

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:CGKCGCGGAGAGATGA
-----CGGAGC-----
 A G T C A C T G A C G T A T G C T C A G A G T C A T C G T C A G T C G A T C A G C G T A C A T G T C G A C A G T C A T G T C G A
A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T

Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer

Match Rank:5
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CGKCGCGGAGAGATGA
-GTGGGGGAGGGG---
 A G T C A C T G A C G T A T G C T C A G A G T C A T C G T C A G T C G A T C A G C G T A C A T G T C G A C A G T C A T G T C G A
A C G T C T A G G C A T A C T G A C T G C T A G A C T G A C T G G C T A C A T G A C T G C A T G A T C G A C G T A C G T A C G T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:6
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-CGKCGCGGAGAGATGA
AGGTCACGGAGAGGTCA
 A C G T A G T C A C T G A C G T A T G C T C A G A G T C A T C G T C A G T C G A T C A G C G T A C A T G T C G A C A G T C A T G T C G A
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

PB0110.1_Bcl6b_2/Jaspar

Match Rank:7
Score:0.49
Offset:-4
Orientation:reverse strand
Alignment:----CGKCGCGGAGAGATGA
NNTNAGGGGCGGNNNN----
 A C G T A C G T A C G T A C G T A G T C A C T G A C G T A T G C T C A G A G T C A T C G T C A G T C G A T C A G C G T A C A T G T C G A C A G T C A T G T C G A
A C G T C G A T C A G T C A G T G C T A T A C G T A C G A C T G C A T G G A T C C T A G C T A G T A C G T A C G T C G A C A G T A C G T A C G T A C G T A C G T

PB0140.1_Irf6_2/Jaspar

Match Rank:8
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:CGKCGCGGAGAGATGA
-NNNACCGAGAGTNNN
 A G T C A C T G A C G T A T G C T C A G A G T C A T C G T C A G T C G A T C A G C G T A C A T G T C G A C A G T C A T G T C G A
A C G T A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:9
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-CGKCGCGGAGAGATGA
RGKGGGCGGAGC-----
 A C G T A G T C A C T G A C G T A T G C T C A G A G T C A T C G T C A G T C G A T C A G C G T A C A T G T C G A C A G T C A T G T C G A
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T A C G T A C G T A C G T

GATA1::TAL1/MA0140.2/Jaspar

Match Rank:10
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-CGKCGCGGAGAGATGA-
CTGNNNNNNNCAGATAAG
 A C G T A G T C A C T G A C G T A T G C T C A G A G T C A T C G T C A G T C G A T C A G C G T A C A T G T C G A C A G T C A T G T C G A A C G T
T A G C C G A T A C T G A G T C C G A T A G T C A T G C C A G T A G T C T G C A T A G C C G T A A C T G C G T A A C G T C G T A C T G A A C T G