Information for 19-TCAGGCTTTTAAT (Motif 26)

A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T C G T A C G T A C G T A C G T A A C T G A G T C A G T C A C G T A C T G C G T A
p-value:1e-7
log p-value:-1.642e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.5 +/- 12.5bp
Average Position of motif in Background49.9 +/- 8.7bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.65
Offset:7
Orientation:reverse strand
Alignment:TCAGGCTTTTAAT
-------TTTAAT
 A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:2
Score:0.60
Offset:5
Orientation:forward strand
Alignment:TCAGGCTTTTAAT---
-----ATATTAATTAA
 A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

Hoxd9/MA0913.1/Jaspar

Match Rank:3
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:TCAGGCTTTTAAT---
------TTTTTATTGC
 A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C

GSX2/MA0893.1/Jaspar

Match Rank:4
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:TCAGGCTTTTAAT----
-------NTTAATTAGN
 A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A G C T C G A T C G T A C G T A G C A T C A G T C T G A T A C G C A G T

LIN54/MA0619.1/Jaspar

Match Rank:5
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TCAGGCTTTTAAT-
-----ATTTGAATT
 A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:6
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:TCAGGCTTTTAAT----
-------TTTAATTGCN
 A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

PB0001.1_Arid3a_1/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TCAGGCTTTTAAT-------
---NNNTTTTAATTAANNNN
 A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C G T A C G T A C A G T G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A T G A C T A G C A T G C

Nr2e3/MA0164.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TCAGGCTTTTAAT
-CAAGCTT-----
 A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C G T
A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:9
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:TCAGGCTTTTAAT---
--------TTAATTAN
 A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G

NKX6-1/MA0674.1/Jaspar

Match Rank:10
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:TCAGGCTTTTAAT---
--------TTAATTAN
 A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C