Information for 11-AGTRATGACTKAAAKT (Motif 23)

C G T A T A C G C G A T C T G A C T G A A C G T A C T G C G T A T G A C C G A T A C T G C G T A C G T A C G T A A C T G A G C T
Reverse Opposite:
C T G A G T A C G C A T A C G T A C G T G T A C G C T A A C T G A C G T G T A C C G T A A G C T A G C T G C T A A T G C A C G T
p-value:1e-8
log p-value:-1.991e+01
Information Content per bp:1.737
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif6.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.4 +/- 16.5bp
Average Position of motif in Background51.4 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0146.1_Pou3f1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGTRATGACTKAAAKT
AATTAATTAATTAATTC
 A C G T C G T A T A C G C G A T C T G A C T G A A C G T A C T G C G T A T G A C C G A T A C T G C G T A C G T A C G T A A C T G A G C T
C T G A T G C A A G C T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A T C G A A C G T C G A T G T A C

PH0062.1_Hoxb7/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGTRATGACTKAAAKT
GTAGTAATTAATGCAA--
 A C G T A C G T C G T A T A C G C G A T C T G A C T G A A C G T A C T G C G T A T G A C C G A T A C T G C G T A C G T A C G T A A C T G A G C T
A T C G A G C T T G C A A C T G G A C T G T C A G C T A C G A T C A G T C T G A T G C A A C G T C A T G A T G C G C T A C T G A A C G T A C G T

PH0142.1_Pou1f1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGTRATGACTKAAAKT
GATTAATTAATTAAGTC
 A C G T C G T A T A C G C G A T C T G A C T G A A C G T A C T G C G T A T G A C C G A T A C T G C G T A C G T A C G T A A C T G A G C T
C T A G T C G A C G A T C A G T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G C T A C G T A C A T G C G A T A G T C

PH0149.1_Pou3f4/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGTRATGACTKAAAKT
AATTAATTAATTAATTC
 A C G T C G T A T A C G C G A T C T G A C T G A A C G T A C T G C G T A T G A C C G A T A C T G C G T A C G T A C G T A A C T G A G C T
C T G A T G C A G C A T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G C T A C T G A C A G T C G A T A G T C

PH0093.1_Lhx3/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGTRATGACTKAAAKT--
-GAAATTAATTAAATAAT
 C G T A T A C G C G A T C T G A C T G A A C G T A C T G C G T A T G A C C G A T A C T G C G T A C G T A C G T A A C T G A G C T A C G T A C G T
A C G T T A C G C G A T G T C A T C G A G A C T G A C T C T G A C G T A C G A T A G C T C T G A C T G A C G T A C G A T G T C A G T C A A C G T

BATF::JUN/MA0462.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGTRATGACTKAAAKT
-GAAATGACTCA----
 C G T A T A C G C G A T C T G A C T G A A C G T A C T G C G T A T G A C C G A T A C T G C G T A C G T A C G T A A C T G A G C T
A C G T C T A G C T G A C G T A G T C A A C G T A C T G C G T A T A G C A C G T T G A C C G T A A C G T A C G T A C G T A C G T

PH0071.1_Hoxc6/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGTRATGACTKAAAKT
CAAATTAATTAATAAAA--
 A C G T A C G T A C G T C G T A T A C G C G A T C T G A C T G A A C G T A C T G C G T A T G A C C G A T A C T G C G T A C G T A C G T A A C T G A G C T
A G T C C T G A G C T A T C G A C A G T G A C T G C T A C G T A C G A T C G A T C T G A G T C A A C G T C G T A T C G A T G C A C G T A A C G T A C G T

PH0173.1_Uncx/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGTRATGACTKAAAKT-
CATAATTAATTAACGCG
 C G T A T A C G C G A T C T G A C T G A A C G T A C T G C G T A T G A C C G A T A C T G C G T A C G T A C G T A A C T G A G C T A C G T
T G A C C T G A G C A T C T G A T G C A A G C T G A C T T C G A C G T A G A C T A C G T C T G A C T G A A G T C T A C G T A G C A C T G

PH0095.1_Lhx5/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGTRATGACTKAAAKT--
-CGAATTAATTAAATACT
 C G T A T A C G C G A T C T G A C T G A A C G T A C T G C G T A T G A C C G A T A C T G C G T A C G T A C G T A A C T G A G C T A C G T A C G T
A C G T T A G C C T A G G C T A C T G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C T A G C A T G T C A G T A C A G C T

PH0008.1_Barx2/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AGTRATGACTKAAAKT
NANAANTAATTANTTA----
 A C G T A C G T A C G T A C G T C G T A T A C G C G A T C T G A C T G A A C G T A C T G C G T A T G A C C G A T A C T G C G T A C G T A C G T A A C T G A G C T
G A C T C T G A G A C T G T C A T C G A A G T C G A C T G T C A G C T A C A G T C A G T C T G A T G A C A G C T C G A T C G T A A C G T A C G T A C G T A C G T