Information for 8-RWWTAWGCTCTCA (Motif 7)

C T G A C G T A G C T A A C G T G T C A C G T A C T A G A T G C C G A T A G T C A C G T A T G C G T C A
Reverse Opposite:
A C G T T A C G C G T A C T A G C G T A T A C G A G T C C G A T A C G T G T C A C G A T C G A T A G C T
p-value:1e-9
log p-value:-2.224e+01
Information Content per bp:1.677
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif28.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets62.3 +/- 21.3bp
Average Position of motif in Background44.7 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.57
Offset:4
Orientation:forward strand
Alignment:RWWTAWGCTCTCA--
----AGCCACTCAAG
 C T G A C G T A G C T A A C G T G T C A C G T A C T A G A T G C C G A T A G T C A C G T A T G C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.57
Offset:4
Orientation:forward strand
Alignment:RWWTAWGCTCTCA-
----AAGCACTTAA
 C T G A C G T A G C T A A C G T G T C A C G T A C T A G A T G C C G A T A G T C A C G T A T G C G T C A A C G T
A C G T A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.56
Offset:4
Orientation:forward strand
Alignment:RWWTAWGCTCTCA-
----AASCACTCAA
 C T G A C G T A G C T A A C G T G T C A C G T A C T A G A T G C C G A T A G T C A C G T A T G C G T C A A C G T
A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

PH0112.1_Nkx2-3/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:RWWTAWGCTCTCA---
CNTTAAGTACTTAANG
 C T G A C G T A G C T A A C G T G T C A C G T A C T A G A T G C C G A T A G T C A C G T A T G C G T C A A C G T A C G T A C G T
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

PH0117.1_Nkx3-1/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-RWWTAWGCTCTCA---
NATTTAAGTACTTANNA
 A C G T C T G A C G T A G C T A A C G T G T C A C G T A C T A G A T G C C G A T A G T C A C G T A T G C G T C A A C G T A C G T A C G T
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:RWWTAWGCTCTCA--
-----TGGTTTCAGT
 C T G A C G T A G C T A A C G T G T C A C G T A C T A G A T G C C G A T A G T C A C G T A T G C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T

PH0004.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:RWWTAWGCTCTCA-----
-CATAACCACTTAACAAC
 C T G A C G T A G C T A A C G T G T C A C G T A C T A G A T G C C G A T A G T C A C G T A T G C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

PH0116.1_Nkx2-9/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-RWWTAWGCTCTCA---
NATTTAAGTACTTNAAA
 A C G T C T G A C G T A G C T A A C G T G T C A C G T A C T A G A T G C C G A T A G T C A C G T A T G C G T C A A C G T A C G T A C G T
C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A

Rhox11/MA0629.1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:RWWTAWGCTCTCA-----
-AAGACGCTGTAAAGCGA
 C T G A C G T A G C T A A C G T G T C A C G T A C T A G A T G C C G A T A G T C A C G T A T G C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:RWWTAWGCTCTCA-----
-AAGACGCTGTAAAGCGA
 C T G A C G T A G C T A A C G T G T C A C G T A C T A G A T G C C G A T A G T C A C G T A T G C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A