Information for 1-GAAAAGGGCA (Motif 6)

A C T G G T C A C T G A G T C A C T G A A T C G C A T G A T C G G T A C T C G A
Reverse Opposite:
A G C T A C T G A T G C G T A C A T G C A G C T A C G T A G C T A C G T G T A C
p-value:1e-10
log p-value:-2.532e+01
Information Content per bp:1.837
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif3.20%
Number of Background Sequences with motif227.3
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets49.0 +/- 24.1bp
Average Position of motif in Background48.5 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:1
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GAAAAGGGCA
ANGNAAAGGTCA
 A C G T A C G T A C T G G T C A C T G A G T C A C T G A A T C G C A T G A T C G G T A C T C G A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

PB0049.1_Nr2f2_1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GAAAAGGGCA----
TCTCAAAGGTCACGAG
 A C G T A C G T A C T G G T C A C T G A G T C A C T G A A T C G C A T G A T C G G T A C T C G A A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

PB0053.1_Rara_1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GAAAAGGGCA----
TCTCAAAGGTCACCTG
 A C G T A C G T A C T G G T C A C T G A G T C A C T G A A T C G C A T G A T C G G T A C T C G A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GAAAAGGGCA-
-CAAAGGTCAG
 A C T G G T C A C T G A G T C A C T G A A T C G C A T G A T C G G T A C T C G A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GAAAAGGGCA
TAGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T A C T G G T C A C T G A G T C A C T G A A T C G C A T G A T C G G T A C T C G A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

PB0146.1_Mafk_2/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GAAAAGGGCA---
GAAAAAATTGCAAGG
 A C G T A C G T A C T G G T C A C T G A G T C A C T G A A T C G C A T G A T C G G T A C T C G A A C G T A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

PB0200.1_Zfp187_2/Jaspar

Match Rank:7
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----GAAAAGGGCA-
NNAGGGACAAGGGCNC
 A C G T A C G T A C G T A C G T A C G T A C T G G T C A C T G A G T C A C T G A A T C G C A T G A T C G G T A C T C G A A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GAAAAGGGCA--
--CAAGGHCANV
 A C T G G T C A C T G A G T C A C T G A A T C G C A T G A T C G G T A C T C G A A C G T A C G T
A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GAAAAGGGCA
TGGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T A C T G G T C A C T G A G T C A C T G A A T C G C A T G A T C G G T A C T C G A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:10
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GAAAAGGGCA
GTAGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T A C G T A C T G G T C A C T G A G T C A C T G A A T C G C A T G A T C G G T A C T C G A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A