Information for 2-RACTMAAGTAGRK (Motif 3)

C T A G C G T A A G T C A C G T G T A C C G T A C G T A A C T G C G A T C G T A A C T G C T A G A C G T
Reverse Opposite:
G T C A A G T C A G T C A C G T C G T A A G T C A C G T A C G T A C T G C G T A A C T G A C G T A G T C
p-value:1e-11
log p-value:-2.642e+01
Information Content per bp:1.876
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets68.0 +/- 24.5bp
Average Position of motif in Background23.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0114.1_Nkx2-5/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-RACTMAAGTAGRK--
AAATTCAAGTGGNTTN
 A C G T C T A G C G T A A G T C A C G T G T A C C G T A C G T A A C T G C G A T C G T A A C T G C T A G A C G T A C G T A C G T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

NKX2-8/MA0673.1/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:RACTMAAGTAGRK
--NTCAAGTGG--
 C T A G C G T A A G T C A C G T G T A C C G T A C G T A A C T G C G A T C G T A A C T G C T A G A C G T
A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-RACTMAAGTAGRK--
AANTTCAAGTGGCTTN
 A C G T C T A G C G T A A G T C A C G T G T A C C G T A C G T A A C T G C G A T C G T A A C T G C T A G A C G T A C G T A C G T
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

PH0113.1_Nkx2-4/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-RACTMAAGTAGRK--
AATTTCAAGTGGCTTN
 A C G T C T A G C G T A A G T C A C G T G T A C C G T A C G T A A C T G C G A T C G T A A C T G C T A G A C G T A C G T A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

PH0115.1_Nkx2-6/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-RACTMAAGTAGRK--
AATNTTAAGTGGNTNN
 A C G T C T A G C G T A A G T C A C G T G T A C C G T A C G T A A C T G C G A T C G T A A C T G C T A G A C G T A C G T A C G T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

PH0111.1_Nkx2-2/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--RACTMAAGTAGRK--
NANTTTCAAGTGGTTAN
 A C G T A C G T C T A G C G T A A G T C A C G T G T A C C G T A C G T A A C T G C G A T C G T A A C T G C T A G A C G T A C G T A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:RACTMAAGTAGRK
--NTCAAGTGGN-
 C T A G C G T A A G T C A C G T G T A C C G T A C G T A A C T G C G A T C G T A A C T G C T A G A C G T
A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-RACTMAAGTAGRK---
NTNNTTAAGTGGNTNAN
 A C G T C T A G C G T A A G T C A C G T G T A C C G T A C G T A A C T G C G A T C G T A A C T G C T A G A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

PB0154.1_Osr1_2/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:RACTMAAGTAGRK---
NNNTTAGGTAGCNTNT
 C T A G C G T A A G T C A C G T G T A C C G T A C G T A A C T G C G A T C G T A A C T G C T A G A C G T A C G T A C G T A C G T
A C T G C A G T G C T A C A G T A G C T C G T A C T A G A C T G C G A T C T G A C T A G A G T C C T G A C G A T C T A G G A C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---RACTMAAGTAGRK
AGCCACTCAAG-----
 A C G T A C G T A C G T C T A G C G T A A G T C A C G T G T A C C G T A C G T A A C T G C G A T C G T A A C T G C T A G A C G T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T