Information for 1-GCTGCTCAGCGBTCGG (Motif 6)

A C T G A G T C C A G T A C T G A G T C C G A T A G T C C G T A T C A G A G T C A C T G A C G T A C G T A G T C A C T G A T C G
Reverse Opposite:
A T G C G T A C C T A G T G C A T C G A G T A C A C T G A G T C A C G T A C T G C G T A A C T G A G T C G T C A A C T G A G T C
p-value:1e-11
log p-value:-2.556e+01
Information Content per bp:1.807
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.4 +/- 14.4bp
Average Position of motif in Background75.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GCTGCTCAGCGBTCGG
---DCTCAGCAGG---
 A C T G A G T C C A G T A C T G A G T C C G A T A G T C C G T A T C A G A G T C A C T G A C G T A C G T A G T C A C T G A T C G
A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:2
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GCTGCTCAGCGBTCGG--
---NCGCAGCGGGGGGTC
 A C T G A G T C C A G T A C T G A G T C C G A T A G T C C G T A T C A G A G T C A C T G A C G T A C G T A G T C A C T G A T C G A C G T A C G T
A C G T A C G T A C G T C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

ZIC1/MA0696.1/Jaspar

Match Rank:3
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GCTGCTCAGCGBTCGG--
----CACAGCGGGGGGTC
 A C T G A G T C C A G T A C T G A G T C C G A T A G T C C G T A T C A G A G T C A C T G A C G T A C G T A G T C A C T G A T C G A C G T A C G T
A C G T A C G T A C G T A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GCTGCTCAGCGBTCGG--
---DCHCAGCAGGRGGCC
 A C T G A G T C C A G T A C T G A G T C C G A T A G T C C G T A T C A G A G T C A C T G A C G T A C G T A G T C A C T G A T C G A C G T A C G T
A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

ZIC4/MA0751.1/Jaspar

Match Rank:5
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GCTGCTCAGCGBTCGG--
---NCNCAGCGGGGGGTC
 A C T G A G T C C A G T A C T G A G T C C G A T A G T C C G T A T C A G A G T C A C T G A C G T A C G T A G T C A C T G A T C G A C G T A C G T
A C G T A C G T A C G T C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GCTGCTCAGCGBTCGG
-CCACACAGCAGGAGA
 A C T G A G T C C A G T A C T G A G T C C G A T A G T C C G T A T C A G A G T C A C T G A C G T A C G T A G T C A C T G A T C G
A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GCTGCTCAGCGBTCGG
-CCACACAGCAGGAGA
 A C T G A G T C C A G T A C T G A G T C C G A T A G T C C G T A T C A G A G T C A C T G A C G T A C G T A G T C A C T G A T C G
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GCTGCTCAGCGBTCGG
-GAGCACAGCAGGACA
 A C T G A G T C C A G T A C T G A G T C C G A T A G T C C G T A T C A G A G T C A C T G A C G T A C G T A G T C A C T G A T C G
A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0199.1_Zfp161_2/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GCTGCTCAGCGBTCGG
GCCGCGCAGTGCGT--
 A C T G A G T C C A G T A C T G A G T C C G A T A G T C C G T A T C A G A G T C A C T G A C G T A C G T A G T C A C T G A T C G
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.51
Offset:4
Orientation:forward strand
Alignment:GCTGCTCAGCGBTCGG
----CACAGCAGGGGG
 A C T G A G T C C A G T A C T G A G T C C G A T A G T C C G T A T C A G A G T C A C T G A C G T A C G T A G T C A C T G A T C G
A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G