Information for 23-CGTGTCTGTTCAT (Motif 34)

A G T C T A C G C G A T T A C G G A C T A T G C A C G T A T C G A C G T C A G T A T G C T G C A A C G T
Reverse Opposite:
T G C A A C G T A T C G G C T A T C G A T A G C C G T A T A C G C T G A A T G C C G T A A G T C T C A G
p-value:1e-5
log p-value:-1.293e+01
Information Content per bp:1.679
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.97%
Number of Background Sequences with motif213.1
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets56.1 +/- 18.5bp
Average Position of motif in Background48.8 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:CGTGTCTGTTCAT--
-----CTGTTCCTGG
 A G T C T A C G C G A T T A C G G A C T A T G C A C G T A T C G A C G T C A G T A T G C T G C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

PB0151.1_Myf6_2/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CGTGTCTGTTCAT
GGNGCGNCTGTTNNN
 A C G T A C G T A G T C T A C G C G A T T A C G G A C T A T G C A C G T A T C G A C G T C A G T A T G C T G C A A C G T
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CGTGTCTGTTCAT
VBSYGTCTGG----
 A C G T A G T C T A C G C G A T T A C G G A C T A T G C A C G T A T C G A C G T C A G T A T G C T G C A A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CGTGTCTGTTCAT
-CTGTCTGG----
 A G T C T A C G C G A T T A C G G A C T A T G C A C G T A T C G A C G T C A G T A T G C T G C A A C G T
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CGTGTCTGTTCAT-
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A G T C T A C G C G A T T A C G G A C T A T G C A C G T A T C G A C G T C A G T A T G C T G C A A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CGTGTCTGTTCAT
-TWGTCTGV----
 A G T C T A C G C G A T T A C G G A C T A T G C A C G T A T C G A C G T C A G T A T G C T G C A A C G T
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CGTGTCTGTTCAT
--TGTCGGTT---
 A G T C T A C G C G A T T A C G G A C T A T G C A C G T A T C G A C G T C A G T A T G C T G C A A C G T
A C G T A C G T C G A T C A T G C G A T G A T C T C A G A T C G G C A T G C A T A C G T A C G T A C G T

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CGTGTCTGTTCAT
-GTTTCACTTCCG
 A G T C T A C G C G A T T A C G G A C T A T G C A C G T A T C G A C G T C A G T A T G C T G C A A C G T
A C G T A T C G G A C T A C G T A G C T A G T C G C T A A G T C G C A T A C G T A G T C G A T C A C T G

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CGTGTCTGTTCAT
CTCATGAATATTCAT
 A C G T A C G T A G T C T A C G C G A T T A C G G A C T A T G C A C G T A T C G A C G T C A G T A T G C T G C A A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

PB0016.1_Foxj1_1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CGTGTCTGTTCAT---
NNNNTTTGTTTACNNT
 A G T C T A C G C G A T T A C G G A C T A T G C A C G T A T C G A C G T C A G T A T G C T G C A A C G T A C G T A C G T A C G T
G T C A G T C A G C A T C A G T G C A T C A G T C G A T C T A G C G A T C G A T C A G T C T G A A G T C C G A T G C A T C G A T