Information for 13-CACGAAAWCCAGC (Motif 18)

T G A C G C T A A T G C A T C G T C G A C G T A G T C A C G A T A T G C A G T C C G T A C T A G T G A C
Reverse Opposite:
A C T G A G T C A C G T A C T G A T C G G C T A A C G T A C G T A G C T A T G C T A C G C A G T A C T G
p-value:1e-8
log p-value:-1.958e+01
Information Content per bp:1.735
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.57%
Number of Background Sequences with motif72.5
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets44.8 +/- 21.5bp
Average Position of motif in Background48.2 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CACGAAAWCCAGC--
-----ATGCCAGACN
 T G A C G C T A A T G C A T C G T C G A C G T A G T C A C G A T A T G C A G T C C G T A C T A G T G A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CACGAAAWCCAGC-
TGACANARRCCAGRC
 A C G T T G A C G C T A A T G C A T C G T C G A C G T A G T C A C G A T A T G C A G T C C G T A C T A G T G A C A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CACGAAAWCCAGC
NACAGGAAAT-----
 A C G T A C G T T G A C G C T A A T G C A T C G T C G A C G T A G T C A C G A T A T G C A G T C C G T A C T A G T G A C
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CACGAAAWCCAGC
TBGCACGCAA------
 A C G T A C G T A C G T T G A C G C T A A T G C A T C G T C G A C G T A G T C A C G A T A T G C A G T C C G T A C T A G T G A C
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

IRF7/MA0772.1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CACGAAAWCCAGC--
-ACGAAAGCGAAAGT
 T G A C G C T A A T G C A T C G T C G A C G T A G T C A C G A T A T G C A G T C C G T A C T A G T G A C A C G T A C G T
A C G T G T C A T G A C A C T G T G C A C G T A G T C A T C A G G A T C C T A G G T C A T C G A G C T A T C A G G C A T

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CACGAAAWCCAGC
NACAGGAAAT-----
 A C G T A C G T T G A C G C T A A T G C A T C G T C G A C G T A G T C A C G A T A T G C A G T C C G T A C T A G T G A C
T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CACGAAAWCCAGC
--TCCAATCCACA
 T G A C G C T A A T G C A T C G T C G A C G T A G T C A C G A T A T G C A G T C C G T A C T A G T G A C
A C G T A C G T A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CACGAAAWCCAGC
----TAATCCCN-
 T G A C G C T A A T G C A T C G T C G A C G T A G T C A C G A T A T G C A G T C C G T A C T A G T G A C
A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CACGAAAWCCAGC--
---SSAATCCACANN
 T G A C G C T A A T G C A T C G T C G A C G T A G T C A C G A T A T G C A G T C C G T A C T A G T G A C A C G T A C G T
A C G T A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:CACGAAAWCCAGC
------TGCCAA-
 T G A C G C T A A T G C A T C G T C G A C G T A G T C A C G A T A T G C A G T C C G T A C T A G T G A C
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T