Information for 7-YTGCATTTYMAAA (Motif 24)

A G C T A C G T A C T G A G T C C G T A A C G T A C G T A C G T A G C T T G A C C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C G T C T G A C G T A C G T A C G T A A C G T A C T G A G T C C G T A C T G A
p-value:1e-7
log p-value:-1.725e+01
Information Content per bp:1.897
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.8 +/- 29.4bp
Average Position of motif in Background40.4 +/- 15.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--YTGCATTTYMAAA
ATTTGCATAACAAAG
 A C G T A C G T A G C T A C G T A C T G A G T C C G T A A C G T A C G T A C G T A G C T T G A C C G T A C G T A C G T A
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.65
Offset:3
Orientation:forward strand
Alignment:YTGCATTTYMAAA
---CGGTTTCAAA
 A G C T A C G T A C T G A G T C C G T A A C G T A C G T A C G T A G C T T G A C C G T A C G T A C G T A
A C G T A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--YTGCATTTYMAAA
ATTTGCATAACAATG
 A C G T A C G T A G C T A C G T A C T G A G T C C G T A A C G T A C G T A C G T A G C T T G A C C G T A C G T A C G T A
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----YTGCATTTYMAAA
TTCATTTGCATAT-----
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A G T C C G T A A C G T A C G T A C G T A G C T T G A C C G T A C G T A C G T A
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T A C G T A C G T A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--YTGCATTTYMAAA
ATTTGCATAT-----
 A C G T A C G T A G C T A C G T A C T G A G T C C G T A A C G T A C G T A C G T A G C T T G A C C G T A C G T A C G T A
G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T A C G T A C G T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:YTGCATTTYMAAA
----NATTCAAAT
 A G C T A C G T A C T G A G T C C G T A A C G T A C G T A C G T A G C T T G A C C G T A C G T A C G T A
A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--YTGCATTTYMAAA
ATTTGCATAA-----
 A C G T A C G T A G C T A C G T A C T G A G T C C G T A A C G T A C G T A C G T A G C T T G A C C G T A C G T A C G T A
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T A C G T A C G T A C G T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----YTGCATTTYMAAA
GGGATTGCATNN-----
 A C G T A C G T A C G T A C G T A G C T A C G T A C T G A G T C C G T A A C G T A C G T A C G T A G C T T G A C C G T A C G T A C G T A
T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T

CEBPA/MA0102.3/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:YTGCATTTYMAAA--
----ATTGCACAATA
 A G C T A C G T A C T G A G T C C G T A A C G T A C G T A C G T A G C T T G A C C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A C G T A C G T C A T G A G T C T G C A G A T C G T C A C G T A A G C T G T C A

PH0148.1_Pou3f3/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----YTGCATTTYMAAA
AAAATATGCATAATAAA-
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A G T C C G T A A C G T A C G T A C G T A G C T T G A C C G T A C G T A C G T A
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A A C G T