Information for 12-GCCGVGCDCTCTGCAA (Motif 20)

A C T G G T A C T A G C A C T G T A C G A T C G A T G C C G A T A G T C A G C T A G T C A C G T A C T G A G T C G T C A C G T A
Reverse Opposite:
A C G T A C G T C T A G A G T C C G T A C T A G C T G A A C T G G C T A A T C G A T G C A T G C A G T C A T C G A C T G A G T C
p-value:1e-8
log p-value:-2.001e+01
Information Content per bp:1.773
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets64.0 +/- 21.3bp
Average Position of motif in Background81.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GCCGVGCDCTCTGCAA-
-CTTGGCANNNTGCCAA
 A C T G G T A C T A G C A C T G T A C G A T C G A T G C C G A T A G T C A G C T A G T C A C G T A C T G A G T C G T C A C G T A A C G T
A C G T A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.51
Offset:10
Orientation:forward strand
Alignment:GCCGVGCDCTCTGCAA--
----------TTGCCAAG
 A C T G G T A C T A G C A C T G T A C G A T C G A T G C C G A T A G T C A G C T A G T C A C G T A C T G A G T C G T C A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

PB0008.1_E2F2_1/Jaspar

Match Rank:3
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GCCGVGCDCTCTGCAA
NTCGCGCGCCTTNNN-
 A C T G G T A C T A G C A C T G T A C G A T C G A T G C C G A T A G T C A G C T A G T C A C G T A C T G A G T C G T C A C G T A
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:4
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GCCGVGCDCTCTGCAA
--AGGVNCCTTTGT--
 A C T G G T A C T A G C A C T G T A C G A T C G A T G C C G A T A G T C A G C T A G T C A C G T A C T G A G T C G T C A C G T A
A C G T A C G T C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T

HINFP/MA0131.2/Jaspar

Match Rank:5
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:GCCGVGCDCTCTGCAA
-NCGCGGACGTTG---
 A C T G G T A C T A G C A C T G T A C G A T C G A T G C C G A T A G T C A G C T A G T C A C G T A C T G A G T C G T C A C G T A
A C G T T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G A C G T A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GCCGVGCDCTCTGCAA
GTCACGCTCNCTGA--
 A C T G G T A C T A G C A C T G T A C G A T C G A T G C C G A T A G T C A G C T A G T C A C G T A C T G A G T C G T C A C G T A
A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:7
Score:0.49
Offset:3
Orientation:forward strand
Alignment:GCCGVGCDCTCTGCAA----
---AATCGCACTGCATTCCG
 A C T G G T A C T A G C A C T G T A C G A T C G A T G C C G A T A G T C A G C T A G T C A C G T A C T G A G T C G T C A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:GCCGVGCDCTCTGCAA-
---TGGCAGNCTGCCAG
 A C T G G T A C T A G C A C T G T A C G A T C G A T G C C G A T A G T C A G C T A G T C A C G T A C T G A G T C G T C A C G T A A C G T
A C G T A C G T A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

PB0009.1_E2F3_1/Jaspar

Match Rank:9
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:GCCGVGCDCTCTGCAA
ANCGCGCGCCCTTNN-
 A C T G G T A C T A G C A C T G T A C G A T C G A T G C C G A T A G T C A G C T A G T C A C G T A C T G A G T C G T C A C G T A
C G T A C G A T T A G C C T A G T A G C A T C G A T G C A C T G A G T C A T G C G A T C C G A T G C A T C G T A A G C T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:10
Score:0.48
Offset:4
Orientation:reverse strand
Alignment:GCCGVGCDCTCTGCAA---
----TGGACTTTGNNCTCN
 A C T G G T A C T A G C A C T G T A C G A T C G A T G C C G A T A G T C A G C T A G T C A C G T A C T G A G T C G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T