Information for 10-TGCCTGCCATGCAGGC (Motif 18)

C A G T A C T G A T G C A G T C A C G T A C T G A G T C G T A C C G T A C A G T A C T G G T A C G T C A A C T G A T C G A G T C
Reverse Opposite:
A C T G A T G C A G T C A C G T A C T G A G T C G T C A C G A T C A T G A C T G A G T C G T C A A C T G A T C G G T A C G C T A
p-value:1e-8
log p-value:-2.001e+01
Information Content per bp:1.834
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.8 +/- 25.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGCCTGCCATGCAGGC
TGGCAGNCTGCCAG--
 C A G T A C T G A T G C A G T C A C G T A C T G A G T C G T A C C G T A C A G T A C T G G T A C G T C A A C T G A T C G A G T C
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TGCCTGCCATGCAGGC--
---CCACACAGCAGGAGA
 C A G T A C T G A T G C A G T C A C G T A C T G A G T C G T A C C G T A C A G T A C T G G T A C G T C A A C T G A T C G A G T C A C G T A C G T
A C G T A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TGCCTGCCATGCAGGC
-GSCTGTCACTCA---
 C A G T A C T G A T G C A G T C A C G T A C T G A G T C G T A C C G T A C A G T A C T G G T A C G T C A A C T G A T C G A G T C
A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:TGCCTGCCATGCAGGC-
--SCAGYCADGCATGAC
 C A G T A C T G A T G C A G T C A C G T A C T G A G T C G T A C C G T A C A G T A C T G G T A C G T C A A C T G A T C G A G T C A C G T
A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.53
Offset:3
Orientation:forward strand
Alignment:TGCCTGCCATGCAGGC--
---CCACACAGCAGGAGA
 C A G T A C T G A T G C A G T C A C G T A C T G A G T C G T A C C G T A C A G T A C T G G T A C G T C A A C T G A T C G A G T C A C G T A C G T
A C G T A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:6
Score:0.52
Offset:4
Orientation:forward strand
Alignment:TGCCTGCCATGCAGGC-
----TGCCCTGAGGGCA
 C A G T A C T G A T G C A G T C A C G T A C T G A G T C G T A C C G T A C A G T A C T G G T A C G T C A A C T G A T C G A G T C A C G T
A C G T A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.52
Offset:6
Orientation:forward strand
Alignment:TGCCTGCCATGCAGGC--
------CACAGCAGGGGG
 C A G T A C T G A T G C A G T C A C G T A C T G A G T C G T A C C G T A C A G T A C T G G T A C G T C A A C T G A T C G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:TGCCTGCCATGCAGGC----
-----DCHCAGCAGGRGGCC
 C A G T A C T G A T G C A G T C A C G T A C T G A G T C G T A C C G T A C A G T A C T G G T A C G T C A A C T G A T C G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.51
Offset:3
Orientation:forward strand
Alignment:TGCCTGCCATGCAGGC--
---GAGCACAGCAGGACA
 C A G T A C T G A T G C A G T C A C G T A C T G A G T C G T A C C G T A C A G T A C T G G T A C G T C A A C T G A T C G A G T C A C G T A C G T
A C G T A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:10
Score:0.51
Offset:4
Orientation:forward strand
Alignment:TGCCTGCCATGCAGGC-
----TGCCCTGAGGGCA
 C A G T A C T G A T G C A G T C A C G T A C T G A G T C G T A C C G T A C A G T A C T G G T A C G T C A A C T G A T C G A G T C A C G T
A C G T A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A