Information for 3-WCTGCBAAGG (Motif 12)

C G T A A T G C G A C T A T C G A G T C A G C T C T G A C T G A A C T G A C T G
Reverse Opposite:
A G T C A G T C A G C T A G C T T C G A A C T G A T G C C T G A A T C G G C A T
p-value:1e-9
log p-value:-2.079e+01
Information Content per bp:1.792
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif7.04%
Number of Background Sequences with motif1298.1
Percentage of Background Sequences with motif2.68%
Average Position of motif in Targets55.0 +/- 24.2bp
Average Position of motif in Background50.5 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:WCTGCBAAGG
ACWTCAAAGG
 C G T A A T G C G A C T A T C G A G T C A G C T C T G A C T G A A C T G A C T G
C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:WCTGCBAAGG
--TGCCAA--
 C G T A A T G C G A C T A T C G A G T C A G C T C T G A C T G A A C T G A C T G
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:WCTGCBAAGG
GGTGCCAAGT
 C G T A A T G C G A C T A T C G A G T C A G C T C T G A C T G A A C T G A C T G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:WCTGCBAAGG
CGTGCCAAG-
 C G T A A T G C G A C T A T C G A G T C A G C T C T G A C T G A A C T G A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:WCTGCBAAGG
-TTGCCAAG-
 C G T A A T G C G A C T A T C G A G T C A G C T C T G A C T G A A C T G A C T G
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:WCTGCBAAGG-
-CAGATAAGGN
 C G T A A T G C G A C T A T C G A G T C A G C T C T G A C T G A A C T G A C T G A C G T
A C G T T A G C G C T A A C T G C G T A A C G T C G T A C G T A T A C G T C A G T C G A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:WCTGCBAAGG---
---NTCAAGGTCA
 C G T A A T G C G A C T A T C G A G T C A G C T C T G A C T G A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

PB0022.1_Gata5_1/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---WCTGCBAAGG----
TAAACTGATAAGAAGAT
 A C G T A C G T A C G T C G T A A T G C G A C T A T C G A G T C A G C T C T G A C T G A A C T G A C T G A C G T A C G T A C G T A C G T
G C A T C G T A C G T A C T G A A G T C G C A T A C T G C G T A C G A T G C T A C G T A T A C G T C G A T C G A C A T G C G T A C A G T

HLTF/MA0109.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:WCTGCBAAGG--
--NNATAAGGNN
 C G T A A T G C G A C T A T C G A G T C A G C T C T G A C T G A A C T G A C T G A C G T A C G T
A C G T A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:WCTGCBAAGG---
---BTCAAGGTCA
 C G T A A T G C G A C T A T C G A G T C A G C T C T G A C T G A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A