Information for 8-CMKCCMCGCKGSCCAG (Motif 10)

A G T C G T A C A C T G A G T C A G T C G T C A T A G C A T C G A G T C A C G T A C T G A T C G G T A C G T A C G T C A C T A G
Reverse Opposite:
A G T C A C G T A C T G A C T G A T G C A G T C G T C A A C T G A T G C A C T G A C G T A C T G A C T G G T A C A C T G A C T G
p-value:1e-9
log p-value:-2.229e+01
Information Content per bp:1.778
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif16.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets47.5 +/- 27.0bp
Average Position of motif in Background45.2 +/- 33.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CMKCCMCGCKGSCCAG
SCAGYCADGCATGAC--
 A C G T A G T C G T A C A C T G A G T C A G T C G T C A T A G C A T C G A G T C A C G T A C T G A T C G G T A C G T A C G T C A C T A G
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.54
Offset:9
Orientation:reverse strand
Alignment:CMKCCMCGCKGSCCAG---
---------TGCCCAGNHW
 A G T C G T A C A C T G A G T C A G T C G T C A T A G C A T C G A G T C A C G T A C T G A T C G G T A C G T A C G T C A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CMKCCMCGCKGSCCAG
GCAGCCAAGCGTGACN-
 A C G T A G T C G T A C A C T G A G T C A G T C G T C A T A G C A T C G A G T C A C G T A C T G A T C G G T A C G T A C G T C A C T A G
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------CMKCCMCGCKGSCCAG
TACGCCCCGCCACTCTG-----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A C T G A G T C A G T C G T C A T A G C A T C G A G T C A C G T A C T G A T C G G T A C G T A C G T C A C T A G
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G A C G T A C G T A C G T A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:5
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----CMKCCMCGCKGSCCAG
GAGGGCAGCCAAGCGTGAC--
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C A C T G A G T C A G T C G T C A T A G C A T C G A G T C A C G T A C T G A T C G G T A C G T A C G T C A C T A G
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C A C G T A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:6
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CMKCCMCGCKGSCCAG
-TGCCCNNAGGGCA--
 A G T C G T A C A C T G A G T C A G T C G T C A T A G C A T C G A G T C A C G T A C T G A T C G G T A C G T A C G T C A C T A G
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:CMKCCMCGCKGSCCAG
CRCCCACGCA------
 A G T C G T A C A C T G A G T C A G T C G T C A T A G C A T C G A G T C A C G T A C T G A T C G G T A C G T A C G T C A C T A G
G A T C C T G A A G T C T G A C A G T C G T C A A G T C C T A G A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:8
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CMKCCMCGCKGSCCAG
-TGCCCTNAGGGCA--
 A G T C G T A C A C T G A G T C A G T C G T C A T A G C A T C G A G T C A C G T A C T G A T C G G T A C G T A C G T C A C T A G
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-CMKCCMCGCKGSCCAG
GGCCYCCTGCTGDGH--
 A C G T A G T C G T A C A C T G A G T C A G T C G T C A T A G C A T C G A G T C A C G T A C T G A T C G G T A C G T A C G T C A C T A G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

SP1/MA0079.3/Jaspar

Match Rank:10
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---CMKCCMCGCKGSCCAG
GCCCCGCCCCC--------
 A C G T A C G T A C G T A G T C G T A C A C T G A G T C A G T C G T C A T A G C A T C G A G T C A C G T A C T G A T C G G T A C G T A C G T C A C T A G
A C T G A G T C G A T C A G T C A G T C C A T G A G T C A G T C A G T C G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T