Information for 4-AAAGTTTGATKGK (Motif 8)

C G T A C T G A C T G A A C T G A C G T A C G T A C G T A C T G C G T A A C G T A C G T A C T G A C G T
Reverse Opposite:
G T A C A G T C G T A C C G T A A C G T A G T C C G T A C G T A C G T A G T A C A G C T A G C T A C G T
p-value:1e-11
log p-value:-2.560e+01
Information Content per bp:1.872
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.2 +/- 22.9bp
Average Position of motif in Background52.4 +/- 2.7bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dux/MA0611.1/Jaspar

Match Rank:1
Score:0.71
Offset:5
Orientation:reverse strand
Alignment:AAAGTTTGATKGK
-----TTGATTGN
 C G T A C T G A C T G A A C T G A C G T A C G T A C G T A C T G C G T A A C G T A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G

HOXB13/MA0901.1/Jaspar

Match Rank:2
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:AAAGTTTGATKGK
---NTTTTATTGG
 C G T A C T G A C T G A A C T G A C G T A C G T A C G T A C T G C G T A A C G T A C G T A C T G A C G T
A C G T A C G T A C G T C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G

Arid3a/MA0151.1/Jaspar

Match Rank:3
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:AAAGTTTGATKGK
----TTTAAT---
 C G T A C T G A C T G A A C T G A C G T A C G T A C G T A C T G C G T A A C G T A C G T A C T G A C G T
A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AAAGTTTGATKGK---
NNANTTTTATTGGNNN
 C G T A C T G A C T G A A C T G A C G T A C G T A C G T A C T G C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

PH0134.1_Pbx1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AAAGTTTGATKGK---
NNNNNATTGATGNGTGN
 A C G T C G T A C T G A C T G A A C T G A C G T A C G T A C G T A C T G C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

HOXA13/MA0650.1/Jaspar

Match Rank:6
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:AAAGTTTGATKGK
---TTTTTATTGG
 C G T A C T G A C T G A A C T G A C G T A C G T A C G T A C T G C G T A A C G T A C G T A C T G A C G T
A C G T A C G T A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

HOXD13/MA0909.1/Jaspar

Match Rank:7
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:AAAGTTTGATKGK
---NTTTTATTGG
 C G T A C T G A C T G A A C T G A C G T A C G T A C G T A C T G C G T A A C G T A C G T A C T G A C G T
A C G T A C G T A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:AAAGTTTGATKGK-
----TTTTATTRGN
 C G T A C T G A C T G A A C T G A C G T A C G T A C G T A C T G C G T A A C G T A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

PH0057.1_Hoxb13/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AAAGTTTGATKGK---
NNAATTTTATTGGNTN
 C G T A C T G A C T G A A C T G A C G T A C G T A C G T A C T G C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:10
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:AAAGTTTGATKGK---
----TTTGATTGATGN
 C G T A C T G A C T G A A C T G A C G T A C G T A C G T A C T G C G T A A C G T A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G