Information for 8-GCAAAGGAGG (Motif 21)

A C T G T A G C C G T A C T G A C T G A A C T G A C T G C G T A A T C G T A C G
Reverse Opposite:
A T G C T A G C G C A T A G T C A G T C A G C T A G C T G C A T A T C G A G T C
p-value:1e-7
log p-value:-1.795e+01
Information Content per bp:1.831
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif3.13%
Number of Background Sequences with motif404.9
Percentage of Background Sequences with motif0.85%
Average Position of motif in Targets42.1 +/- 28.3bp
Average Position of motif in Background50.7 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCAAAGGAGG
AACAAAGG---
 A C G T A C T G T A G C C G T A C T G A C T G A A C T G A C T G C G T A A T C G T A C G
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GCAAAGGAGG
AAAACAAAGG---
 A C G T A C G T A C G T A C T G T A G C C G T A C T G A C T G A A C T G A C T G C G T A A T C G T A C G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCAAAGGAGG
RACAAWGG---
 A C G T A C T G T A G C C G T A C T G A C T G A A C T G A C T G C G T A A T C G T A C G
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCAAAGGAGG
ACWTCAAAGG---
 A C G T A C G T A C G T A C T G T A G C C G T A C T G A C T G A A C T G A C T G C G T A A T C G T A C G
C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G A C G T A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCAAAGGAGG-
-AACAGGAAGT
 A C T G T A G C C G T A C T G A C T G A A C T G A C T G C G T A A T C G T A C G A C G T
A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCAAAGGAGG
ACATCAAAGG---
 A C G T A C G T A C G T A C T G T A G C C G T A C T G A C T G A A C T G A C T G C G T A A T C G T A C G
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

HLTF/MA0109.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCAAAGGAGG
NNATAAGGNN-
 A C G T A C T G T A G C C G T A C T G A C T G A A C T G A C T G C G T A A T C G T A C G
C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------GCAAAGGAGG-
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G T A G C C G T A C T G A C T G A A C T G A C T G C G T A A T C G T A C G A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GCAAAGGAGG
WATGCAAATGAG-
 A C G T A C G T A C G T A C T G T A G C C G T A C T G A C T G A A C T G A C T G C G T A A T C G T A C G
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GCAAAGGAGG
GGAACAAAGR---
 A C G T A C G T A C G T A C T G T A G C C G T A C T G A C T G A A C T G A C T G C G T A A T C G T A C G
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T