Information for 1-GCAGCTCAGRGCAGGA (Motif 1)

T C A G A T G C C G T A A C T G A G T C G A C T A T G C C G T A A C T G C T G A A T C G G T A C C T G A C T A G A T C G C T G A
Reverse Opposite:
G A C T A T G C A G T C A G C T A C T G A T G C A G C T A G T C A C G T A T C G C T G A C T A G G T A C C G A T T A C G A G T C
p-value:1e-13
log p-value:-3.149e+01
Information Content per bp:1.776
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.8 +/- 21.0bp
Average Position of motif in Background32.0 +/- 12.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.57
Offset:6
Orientation:forward strand
Alignment:GCAGCTCAGRGCAGGA--
------CACAGCAGGGGG
 T C A G A T G C C G T A A C T G A G T C G A C T A T G C C G T A A C T G C T G A A T C G G T A C C T G A C T A G A T C G C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GCAGCTCAGRGCAGGA--
---CCACACAGCAGGAGA
 T C A G A T G C C G T A A C T G A G T C G A C T A T G C C G T A A C T G C T G A A T C G G T A C C T G A C T A G A T C G C T G A A C G T A C G T
A C G T A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GCAGCTCAGRGCAGGA
-----TNNGGGCAG--
 T C A G A T G C C G T A A C T G A G T C G A C T A T G C C G T A A C T G C T G A A T C G G T A C C T G A C T A G A T C G C T G A
A C G T A C G T A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GCAGCTCAGRGCAGGA----
-----DCHCAGCAGGRGGCC
 T C A G A T G C C G T A A C T G A G T C G A C T A T G C C G T A A C T G C T G A A T C G G T A C C T G A C T A G A T C G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

POL011.1_XCPE1/Jaspar

Match Rank:5
Score:0.53
Offset:8
Orientation:forward strand
Alignment:GCAGCTCAGRGCAGGA--
--------GGGCGGGACC
 T C A G A T G C C G T A A C T G A G T C G A C T A T G C C G T A A C T G C T G A A T C G G T A C C T G A C T A G A T C G C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C T G A G T C A C T G A C T G C T A G C G T A A T G C G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GCAGCTCAGRGCAGGA--
---GAGCACAGCAGGACA
 T C A G A T G C C G T A A C T G A G T C G A C T A T G C C G T A A C T G C T G A A T C G G T A C C T G A C T A G A T C G C T G A A C G T A C G T
A C G T A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

E2F6/MA0471.1/Jaspar

Match Rank:7
Score:0.53
Offset:8
Orientation:forward strand
Alignment:GCAGCTCAGRGCAGGA---
--------GGGCGGGAAGG
 T C A G A T G C C G T A A C T G A G T C G A C T A T G C C G T A A C T G C T G A A T C G G T A C C T G A C T A G A T C G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GCAGCTCAGRGCAGGA
----CAAAGGTCAG--
 T C A G A T G C C G T A A C T G A G T C G A C T A T G C C G T A A C T G C T G A A T C G G T A C C T G A C T A G A T C G C T G A
A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GCAGCTCAGRGCAGGA
GGTCANYTGAGGWCA---
 A C G T A C G T T C A G A T G C C G T A A C T G A G T C G A C T A T G C C G T A A C T G C T G A A T C G G T A C C T G A C T A G A T C G C T G A
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.52
Offset:9
Orientation:reverse strand
Alignment:GCAGCTCAGRGCAGGA---
---------ANCAGGATGT
 T C A G A T G C C G T A A C T G A G T C G A C T A T G C C G T A A C T G C T G A A T C G G T A C C T G A C T A G A T C G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T