Information for 19-TCGATTAAAACAG (Motif 30)

G C A T G A T C C A T G G C T A A C G T A C G T C G T A C G T A C G T A G T C A A G T C G C T A T C A G
Reverse Opposite:
A G T C C A G T A C T G C A G T A C G T C G A T A C G T G T C A G T C A C G A T G A T C C T A G C G T A
p-value:1e-6
log p-value:-1.475e+01
Information Content per bp:1.692
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.0 +/- 12.6bp
Average Position of motif in Background30.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.78
Offset:3
Orientation:forward strand
Alignment:TCGATTAAAACAG
---ATTAAA----
 G C A T G A T C C A T G G C T A A C G T A C G T C G T A C G T A C G T A G T C A A G T C G C T A T C A G
A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T

PB0001.1_Arid3a_1/Jaspar

Match Rank:2
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----TCGATTAAAACAG
GGGTTTAATTAAAATTC
 A C G T A C G T A C G T A C G T G C A T G A T C C A T G G C T A A C G T A C G T C G T A C G T A C G T A G T C A A G T C G C T A T C A G
T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C

Arid3b/MA0601.1/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TCGATTAAAACAG
NTAATTAATAT--
 G C A T G A T C C A T G G C T A A C G T A C G T C G T A C G T A C G T A G T C A A G T C G C T A T C A G
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T

PH0095.1_Lhx5/Jaspar

Match Rank:4
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----TCGATTAAAACAG
CGAATTAATTAAATACT
 A C G T A C G T A C G T A C G T G C A T G A T C C A T G G C T A A C G T A C G T C G T A C G T A C G T A G T C A A G T C G C T A T C A G
T A G C C T A G G C T A C T G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C T A G C A T G T C A G T A C A G C T

PH0093.1_Lhx3/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----TCGATTAAAACAG
GAAATTAATTAAATAAT
 A C G T A C G T A C G T A C G T G C A T G A T C C A T G G C T A A C G T A C G T C G T A C G T A C G T A G T C A A G T C G C T A T C A G
T A C G C G A T G T C A T C G A G A C T G A C T C T G A C G T A C G A T A G C T C T G A C T G A C G T A C G A T G T C A G T C A A C G T

GSX2/MA0893.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TCGATTAAAACAG
ACTAATTAAA----
 A C G T G C A T G A T C C A T G G C T A A C G T A C G T C G T A C G T A C G T A G T C A A G T C G C T A T C A G
G T C A A T G C G A C T G T C A C G T A G C A T G C A T G C T A T C G A G T C A A C G T A C G T A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TCGATTAAAACAG
GCAATAAAAA---
 G C A T G A T C C A T G G C T A A C G T A C G T C G T A C G T A C G T A G T C A A G T C G C T A T C A G
T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TCGATTAAAACAG
NGCAATTAAA----
 A C G T G C A T G A T C C A T G G C T A A C G T A C G T C G T A C G T A C G T A G T C A A G T C G C T A T C A G
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T

DUXA/MA0884.1/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TCGATTAAAACAG
NTGATTAAATTAN
 G C A T G A T C C A T G G C T A A C G T A C G T C G T A C G T A C G T A G T C A A G T C G C T A T C A G
G A C T G C A T T C A G T G C A A G C T A C G T T C G A T C G A C T G A A G C T G A C T C T G A C T A G

MNX1/MA0707.1/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TCGATTAAAACAG
GGTAATTAAA----
 A C G T G C A T G A T C C A T G G C T A A C G T A C G T C G T A C G T A C G T A G T C A A G T C G C T A T C A G
C T A G T A C G A G C T G T C A G T C A G A C T C G A T C G T A C G T A G T C A A C G T A C G T A C G T A C G T