Information for 15-CAAYTGCTTAAAC (Motif 26)

A G T C C G T A C T G A A G T C A C G T A C T G A G T C G A C T A C G T C G T A G T C A C G T A G T A C
Reverse Opposite:
A C T G A C G T A C G T A C G T C G T A C G T A A C T G G T A C C G T A C T A G A G C T C G A T A C T G
p-value:1e-7
log p-value:-1.838e+01
Information Content per bp:1.801
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.2 +/- 21.1bp
Average Position of motif in Background61.8 +/- 15.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0117.1_Nkx3-1/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CAAYTGCTTAAAC-
TACTAAGTACTTAAATG
 A C G T A C G T A C G T A G T C C G T A C T G A A G T C A C G T A C T G A G T C G A C T A C G T C G T A G T C A C G T A G T A C A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

PH0112.1_Nkx2-3/Jaspar

Match Rank:2
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CAAYTGCTTAAAC
CNTTAAGTACTTAANG
 A C G T A C G T A C G T A G T C C G T A C T G A A G T C A C G T A C T G A G T C G A C T A C G T C G T A G T C A C G T A G T A C
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

MF0006.1_bZIP_cEBP-like_subclass/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CAAYTGCTTAAAC
--ATTGCATAA--
 A G T C C G T A C T G A A G T C A C G T A C T G A G T C G A C T A C G T C G T A G T C A C G T A G T A C
A C G T A C G T T C G A G A C T A C G T C T A G G A T C T C G A G A C T G T C A G C T A A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CAAYTGCTTAAAC
---ATGMATATDC
 A G T C C G T A C T G A A G T C A C G T A C T G A G T C G A C T A C G T C G T A G T C A C G T A G T A C
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Ascl2/MA0816.1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAAYTGCTTAAAC
AGCAGCTGCT-----
 A C G T A C G T A G T C C G T A C T G A A G T C A C G T A C T G A G T C G A C T A C G T C G T A G T C A C G T A G T A C
T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CAAYTGCTTAAAC--
CAATTGCAAAAATAT
 A G T C C G T A C T G A A G T C A C G T A C T G A G T C G A C T A C G T C G T A G T C A C G T A G T A C A C G T A C G T
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:7
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CAAYTGCTTAAAC
ATCCACAGGTGCGAAAA-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T G A A G T C A C G T A C T G A G T C G A C T A C G T C G T A G T C A C G T A G T A C
T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:8
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CAAYTGCTTAAAC
NNVVCAGCTGBN-----
 A C G T A C G T A C G T A C G T A G T C C G T A C T G A A G T C A C G T A C T G A G T C G A C T A C G T C G T A G T C A C G T A G T A C
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T A C G T A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CAAYTGCTTAAAC
TNTAATTTGCATACNA
 A C G T A C G T A C G T A G T C C G T A C T G A A G T C A C G T A C T G A G T C G A C T A C G T C G T A G T C A C G T A G T A C
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CAAYTGCTTAAAC
TNTAATTTGCATACNA
 A C G T A C G T A C G T A G T C C G T A C T G A A G T C A C G T A C T G A G T C G A C T A C G T C G T A G T C A C G T A G T A C
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A