Information for 10-AATGCATTTAATTTGG (Motif 19)

C T G A C G T A C A G T C T A G A T G C C G T A C G A T C A G T C G A T G T C A G T C A A G C T C A G T A C G T A T C G C T A G
Reverse Opposite:
A G T C T A G C C G T A G C T A C T G A A C G T A C G T G C T A G C T A C G T A C G A T A T C G A G T C G T C A A C G T A G C T
p-value:1e-9
log p-value:-2.088e+01
Information Content per bp:1.711
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif8.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.0 +/- 28.8bp
Average Position of motif in Background45.6 +/- 35.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0005.1_Bbx_1/Jaspar

Match Rank:1
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-AATGCATTTAATTTGG
TAATTCAATGAAGTG--
 A C G T C T G A C G T A C A G T C T A G A T G C C G T A C G A T C A G T C G A T G T C A G T C A A G C T C A G T A C G T A T C G C T A G
G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:2
Score:0.50
Offset:-6
Orientation:forward strand
Alignment:------AATGCATTTAATTTGG
ACTATGAATGAATGAT------
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G T A C A G T C T A G A T G C C G T A C G A T C A G T C G A T G T C A G T C A A G C T C A G T A C G T A T C G C T A G
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:3
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--AATGCATTTAATTTGG
YTAATTRAWWCCAGATGT
 A C G T A C G T C T G A C G T A C A G T C T A G A T G C C G T A C G A T C A G T C G A T G T C A G T C A A G C T C A G T A C G T A T C G C T A G
G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.49
Offset:1
Orientation:forward strand
Alignment:AATGCATTTAATTTGG
-ATGMATATDC-----
 C T G A C G T A C A G T C T A G A T G C C G T A C G A T C A G T C G A T G T C A G T C A A G C T C A G T A C G T A T C G C T A G
A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T A C G T A C G T

PH0084.1_Irx3_2/Jaspar

Match Rank:5
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--AATGCATTTAATTTGG
AATATACATGTAATATA-
 A C G T A C G T C T G A C G T A C A G T C T A G A T G C C G T A C G A T C A G T C G A T G T C A G T C A A G C T C A G T A C G T A T C G C T A G
C G T A C G T A C G A T C G T A C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A T C G A C G A T C G T A G A C T C G A T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:6
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-AATGCATTTAATTTGG
AGAGCCATAAAATTCG-
 A C G T C T G A C G T A C A G T C T A G A T G C C G T A C G A T C A G T C G A T G T C A G T C A A G C T C A G T A C G T A T C G C T A G
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G A C G T

PH0082.1_Irx2/Jaspar

Match Rank:7
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--AATGCATTTAATTTGG
TAAATACATGTAAAATT-
 A C G T A C G T C T G A C G T A C A G T C T A G A T G C C G T A C G A T C A G T C G A T G T C A G T C A A G C T C A G T A C G T A T C G C T A G
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T A C G T

PH0006.1_Barhl2/Jaspar

Match Rank:8
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--AATGCATTTAATTTGG
AAAAACCAATTAAGAA--
 A C G T A C G T C T G A C G T A C A G T C T A G A T G C C G T A C G A T C A G T C G A T G T C A G T C A A G C T C A G T A C G T A T C G C T A G
G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:9
Score:0.48
Offset:-4
Orientation:forward strand
Alignment:----AATGCATTTAATTTGG
AAAATATGCATAATAAA---
 A C G T A C G T A C G T A C G T C T G A C G T A C A G T C T A G A T G C C G T A C G A T C A G T C G A T G T C A G T C A A G C T C A G T A C G T A T C G C T A G
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A A C G T A C G T A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:10
Score:0.48
Offset:-4
Orientation:forward strand
Alignment:----AATGCATTTAATTTGG
AATCAATTCAATAATT----
 A C G T A C G T A C G T A C G T C T G A C G T A C A G T C T A G A T G C C G T A C G A T C A G T C G A T G T C A G T C A A G C T C A G T A C G T A T C G C T A G
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T A C G T A C G T A C G T A C G T