Information for 5-CAACCAAYCTATC (Motif 14)

G T A C G T C A C T G A G T A C A G T C G C T A C T G A A G T C G A T C G C A T C G T A A C G T G T A C
Reverse Opposite:
A C T G C G T A A C G T C G T A C A T G C T A G A G C T C G A T A C T G C A T G A G C T A C G T A C T G
p-value:1e-10
log p-value:-2.452e+01
Information Content per bp:1.747
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.36%
Number of Background Sequences with motif21.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets40.6 +/- 20.3bp
Average Position of motif in Background50.9 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1/MA0070.1/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAACCAAYCTATC
CCATCAATCAAA-
 G T A C G T C A C T G A G T A C A G T C G C T A C T G A A G T C G A T C G C A T C G T A A C G T G T A C
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:2
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CAACCAAYCTATC--
---GYCATCMATCAT
 G T A C G T C A C T G A G T A C A G T C G C T A C T G A A G T C G A T C G C A T C G T A A C G T G T A C A C G T A C G T
A C G T A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CAACCAAYCTATC
--HNRAATCAAT-
 G T A C G T C A C T G A G T A C A G T C G C T A C T G A A G T C G A T C G C A T C G T A A C G T G T A C
A C G T A C G T G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CAACCAAYCTATC-
---GCCATAAATCA
 G T A C G T C A C T G A G T A C A G T C G C T A C T G A A G T C G A T C G C A T C G T A A C G T G T A C A C G T
A C G T A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

NFYB/MA0502.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CAACCAAYCTATC--
AAATGGACCAATCAG
 G T A C G T C A C T G A G T A C A G T C G C T A C T G A A G T C G A T C G C A T C G T A A C G T G T A C A C G T A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CAACCAAYCTATC-
----TCATCAATCA
 G T A C G T C A C T G A G T A C A G T C G C T A C T G A A G T C G A T C G C A T C G T A A C G T G T A C A C G T
A C G T A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

PH0006.1_Barhl2/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAACCAAYCTATC-
AAAAACCAATTAAGAA
 A C G T A C G T G T A C G T C A C T G A G T A C A G T C G C T A C T G A A G T C G A T C G C A T C G T A A C G T G T A C A C G T
G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAACCAAYCTATC
ACTAGCCAATCA---
 A C G T A C G T G T A C G T C A C T G A G T A C A G T C G C T A C T G A A G T C G A T C G C A T C G T A A C G T G T A C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CAACCAAYCTATC-
--RGCCATYAATCA
 G T A C G T C A C T G A G T A C A G T C G C T A C T G A A G T C G A T C G C A T C G T A A C G T G T A C A C G T
A C G T A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

PH0005.1_Barhl1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CAACCAAYCTATC-
AACAACCAATTAATTC
 A C G T A C G T G T A C G T C A C T G A G T A C A G T C G C T A C T G A A G T C G A T C G C A T C G T A A C G T G T A C A C G T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C