Information for 14-AGBTTAGCGA (Motif 39)

C G T A A C T G A C G T A G C T A C G T C G T A A C T G A G T C A C T G C G T A
Reverse Opposite:
A C G T G T A C C T A G A G T C A C G T C G T A C T G A T C G A A G T C A C G T
p-value:1e-6
log p-value:-1.536e+01
Information Content per bp:1.841
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif8.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets57.2 +/- 25.9bp
Average Position of motif in Background47.9 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HMBOX1/MA0895.1/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AGBTTAGCGA--
--ACTAGTTAAC
 C G T A A C T G A C G T A G C T A C G T C G T A A C T G A G T C A C T G C G T A A C G T A C G T
A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGBTTAGCGA---
-GGTTAGAGACCT
 C G T A A C T G A C G T A G C T A C G T C G T A A C T G A G T C A C T G C G T A A C G T A C G T A C G T
A C G T C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGBTTAGCGA
GGATTAGC--
 C G T A A C T G A C G T A G C T A C G T C G T A A C T G A G T C A C T G C G T A
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGBTTAGCGA-----
GAAAACTAGTTAACATC
 A C G T A C G T C G T A A C T G A C G T A G C T A C G T C G T A A C T G A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

PH0168.1_Hnf1b/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AGBTTAGCGA------
ANNNCTAGTTAACNGNN
 A C G T C G T A A C T G A C G T A G C T A C G T C G T A A C T G A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

Crx/MA0467.1/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----AGBTTAGCGA
AAGAGGATTAG---
 A C G T A C G T A C G T A C G T C G T A A C T G A C G T A G C T A C G T C G T A A C T G A G T C A C T G C G T A
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AGBTTAGCGA
AAGCTTG----
 A C G T C G T A A C T G A C G T A G C T A C G T C G T A A C T G A G T C A C T G C G T A
C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGBTTAGCGA
RGGATTAR---
 A C G T C G T A A C T G A C G T A G C T A C G T C G T A A C T G A G T C A C T G C G T A
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AGBTTAGCGA----
CCGCATAGCAACGGA
 A C G T C G T A A C T G A C G T A G C T A C G T C G T A A C T G A G T C A C T G C G T A A C G T A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AGBTTAGCGA
CAGGTAAGTAT
 A C G T C G T A A C T G A C G T A G C T A C G T C G T A A C T G A G T C A C T G C G T A
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T