Information for 22-CGTGCGGCCGTGC (Motif 36)

A G T C A T C G A C G T A T C G A G T C A C T G A C T G A G T C A G T C A T C G C G A T A T C G A G T C
Reverse Opposite:
C T A G A T G C C G T A A T G C C T A G A C T G G T A C G T A C T A C G A T G C C G T A A T G C A C T G
p-value:1e-7
log p-value:-1.712e+01
Information Content per bp:1.810
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.4 +/- 19.6bp
Average Position of motif in Background29.0 +/- 16.4bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CGTGCGGCCGTGC
GGCCYCCTGCTGDGH
 A C G T A C G T A G T C A T C G A C G T A T C G A G T C A C T G A C T G A G T C A G T C A T C G C G A T A T C G A G T C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CGTGCGGCCGTGC
CCCCCTGCTGTG-
 A G T C A T C G A C G T A T C G A G T C A C T G A C T G A G T C A G T C A T C G C G A T A T C G A G T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CGTGCGGCCGTGC
---GAGSCCGAGC
 A G T C A T C G A C G T A T C G A G T C A C T G A C T G A G T C A G T C A T C G C G A T A T C G A G T C
A C G T A C G T A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CGTGCGGCCGTGC--
NNTCCTGCTGTGNNN
 A G T C A T C G A C G T A T C G A G T C A C T G A C T G A G T C A G T C A T C G C G A T A T C G A G T C A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:5
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CGTGCGGCCGTGC
RTACGTGC--------
 A C G T A C G T A C G T A G T C A T C G A C G T A T C G A G T C A C T G A C T G A G T C A G T C A T C G C G A T A T C G A G T C
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CGTGCGGCCGTGC
GGACGTGC--------
 A C G T A C G T A C G T A G T C A T C G A C G T A T C G A G T C A C T G A C T G A G T C A G T C A T C G C G A T A T C G A G T C
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CGTGCGGCCGTGC
TACGTGCV-------
 A C G T A C G T A G T C A T C G A C G T A T C G A G T C A C T G A C T G A G T C A G T C A T C G C G A T A T C G A G T C
A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CGTGCGGCCGTGC--
TNTCCTGCTGTGNNG
 A G T C A T C G A C G T A T C G A G T C A C T G A C T G A G T C A G T C A T C G C G A T A T C G A G T C A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

ZIC3/MA0697.1/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CGTGCGGCCGTGC
GACCCCCCGCTGCGC
 A C G T A C G T A G T C A T C G A C G T A T C G A G T C A C T G A C T G A G T C A G T C A T C G C G A T A T C G A G T C
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CGTGCGGCCGTGC
CNGTCCTCCC----
 A C G T A G T C A T C G A C G T A T C G A G T C A C T G A C T G A G T C A G T C A T C G C G A T A T C G A G T C
A T G C T C G A T A C G A C G T A T G C A G T C A C G T A G T C A G T C G A T C A C G T A C G T A C G T A C G T