Information for 11-TGCATTGCCAGMTGCW (Motif 24)

C A G T A T C G G A T C G T C A G C A T A C G T A C T G T G A C A G T C C G T A T A C G G T C A A C G T T A C G A T G C C G T A
Reverse Opposite:
C G A T A T C G A T G C T G C A A C G T A T G C C G A T A C T G A C T G G T A C C G T A C G T A C A G T C A T G A T G C G T C A
p-value:1e-9
log p-value:-2.179e+01
Information Content per bp:1.659
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.04%
Number of Background Sequences with motif109.7
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets52.8 +/- 26.3bp
Average Position of motif in Background49.0 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0170.1_Tgif2/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TGCATTGCCAGMTGCW-
-GTATTGACAGCTNNTT
 C A G T A T C G G A T C G T C A G C A T A C G T A C T G T G A C A G T C C G T A T A C G G T C A A C G T T A C G A T G C C G T A A C G T
A C G T A C T G A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C A T G T A G C G A C T T C G A T A C G G C A T C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TGCATTGCCAGMTGCW
----TTGCCAAG----
 C A G T A T C G G A T C G T C A G C A T A C G T A C T G T G A C A G T C C G T A T A C G G T C A A C G T T A C G A T G C C G T A
A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

PH0102.1_Meis1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TGCATTGCCAGMTGCW-
-NTATTGACAGCTNNTT
 C A G T A T C G G A T C G T C A G C A T A C G T A C T G T G A C A G T C C G T A T A C G G T C A A C G T T A C G A T G C C G T A A C G T
A C G T C T A G A C G T C G T A C G A T A C G T A C T G C G T A A G T C C T G A A C T G A T G C G A C T T A G C A T C G G C A T G C A T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.64
Offset:5
Orientation:forward strand
Alignment:TGCATTGCCAGMTGCW
-----TGTCANYT---
 C A G T A T C G G A T C G T C A G C A T A C G T A C T G T G A C A G T C C G T A T A C G G T C A A C G T T A C G A T G C C G T A
A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T A C G T

PH0104.1_Meis2/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TGCATTGCCAGMTGCW-
-NTATTGACAGGTNNTN
 C A G T A T C G G A T C G T C A G C A T A C G T A C T G T G A C A G T C C G T A T A C G G T C A A C G T T A C G A T G C C G T A A C G T
A C G T C T A G C A G T G C T A C G A T G A C T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A G C T G C A T C G A T

PH0169.1_Tgif1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGCATTGCCAGMTGCW-
GATATTGACAGCTGCGT
 C A G T A T C G G A T C G T C A G C A T A C G T A C T G T G A C A G T C C G T A T A C G G T C A A C G T T A C G A T G C C G T A A C G T
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

PH0105.1_Meis3/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TGCATTGCCAGMTGCW-
-GTATTGACAGGTNNTT
 C A G T A T C G G A T C G T C A G C A T A C G T A C T G T G A C A G T C C G T A T A C G G T C A A C G T T A C G A T G C C G T A A C G T
A C G T C A T G A C G T C G T A C G A T G A C T A C T G C G T A A G T C C T G A C T A G T A C G G A C T T G C A G C T A G A C T G C A T

PH0141.1_Pknox2/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TGCATTGCCAGMTGCW-
-NNATTGACAGGTGCTT
 C A G T A T C G G A T C G T C A G C A T A C G T A C T G T G A C A G T C C G T A T A C G G T C A A C G T T A C G A T G C C G T A A C G T
A C G T T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:9
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TGCATTGCCAGMTGCW--
---ANTGCCTGAGGCAAN
 C A G T A T C G G A T C G T C A G C A T A C G T A C T G T G A C A G T C C G T A T A C G G T C A A C G T T A C G A T G C C G T A A C G T A C G T
A C G T A C G T A C G T C G T A C A G T G A C T C A T G G A T C G A T C C A G T T A C G T G C A C A T G C A T G A G T C C G T A G T C A G A C T

PH0140.1_Pknox1/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGCATTGCCAGMTGCW-
-GGATTGACAGGTCNTT
 C A G T A T C G G A T C G T C A G C A T A C G T A C T G T G A C A G T C C G T A T A C G G T C A A C G T T A C G A T G C C G T A A C G T
A C G T A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T