Information for 16-GAGTTCGGCCAAG (Motif 22)

T C A G G T C A C T A G G A C T A G C T T G A C C T A G A C T G A G T C T G A C C T G A C G T A A T C G
Reverse Opposite:
A T G C G C A T A G C T A C T G T C A G G T A C G A T C A C T G C T G A C T G A A G T C A C G T A G T C
p-value:1e-9
log p-value:-2.241e+01
Information Content per bp:1.675
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.72%
Number of Background Sequences with motif206.3
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets48.7 +/- 23.8bp
Average Position of motif in Background51.9 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:GAGTTCGGCCAAG
------TGCCAA-
 T C A G G T C A C T A G G A C T A G C T T G A C C T A G A C T G A G T C T G A C C T G A C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GAGTTCGGCCAAG
----CGTGCCAAG
 T C A G G T C A C T A G G A C T A G C T T G A C C T A G A C T G A G T C T G A C C T G A C G T A A T C G
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

PB0157.1_Rara_2/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAGTTCGGCCAAG--
AGAGCGGGGTCAAGTA
 A C G T T C A G G T C A C T A G G A C T A G C T T G A C C T A G A C T G A G T C T G A C C T G A C G T A A T C G A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GAGTTCGGCCAAG
-----TTGCCAAG
 T C A G G T C A C T A G G A C T A G C T T G A C C T A G A C T G A G T C T G A C C T G A C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAGTTCGGCCAAG
-AAYTAGGTCA--
 T C A G G T C A C T A G G A C T A G C T T G A C C T A G A C T G A G T C T G A C C T G A C G T A A T C G
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GAGTTCGGCCAAG-
----GGTGCCAAGT
 T C A G G T C A C T A G G A C T A G C T T G A C C T A G A C T G A G T C T G A C C T G A C G T A A T C G A C G T
A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

PAX5/MA0014.2/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAGTTCGGCCAAG------
GAGGGCAGCCAAGCGTGAC
 T C A G G T C A C T A G G A C T A G C T T G A C C T A G A C T G A G T C T G A C C T G A C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---GAGTTCGGCCAAG
TTGGCANNNTGCCAAG
 A C G T A C G T A C G T T C A G G T C A C T A G G A C T A G C T T G A C C T A G A C T G A G T C T G A C C T G A C G T A A T C G
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.50
Offset:5
Orientation:forward strand
Alignment:GAGTTCGGCCAAG
-----AGGCCTAG
 T C A G G T C A C T A G G A C T A G C T T G A C C T A G A C T G A G T C T G A C C T G A C G T A A T C G
A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.49
Offset:5
Orientation:forward strand
Alignment:GAGTTCGGCCAAG---
-----AAGGCAAGTGT
 T C A G G T C A C T A G G A C T A G C T T G A C C T A G A C T G A G T C T G A C C T G A C G T A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T