Information for 15-CCARGGCAATGCG (Motif 20)

A G T C A G T C G T C A C T G A C T A G C T A G A G T C C G T A G T C A C G A T A C T G A G T C A T C G
Reverse Opposite:
A T G C A C T G A G T C C G T A A C G T C G A T A C T G A G T C A G T C A G C T A C G T A C T G A C T G
p-value:1e-10
log p-value:-2.336e+01
Information Content per bp:1.834
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.5 +/- 24.8bp
Average Position of motif in Background79.7 +/- 11.3bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6/MA0515.1/Jaspar

Match Rank:1
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CCARGGCAATGCG
--AAAACAATGG-
 A G T C A G T C G T C A C T G A C T A G C T A G A G T C C G T A G T C A C G A T A C T G A G T C A T C G
A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CCARGGCAATGCG
NGTTGCCATGGCAA----
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C G T C A C T G A C T A G C T A G A G T C C G T A G T C A C G A T A C T G A G T C A T C G
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CCARGGCAATGCG
GGTTGCCATGGCAA----
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C G T C A C T G A C T A G C T A G A G T C C G T A G T C A C G A T A C T G A G T C A T C G
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:4
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCARGGCAATGCG
GTTGCCATGGCAAC---
 A C G T A C G T A C G T A C G T A G T C A G T C G T C A C T G A C T A G C T A G A G T C C G T A G T C A C G A T A C T G A G T C A T C G
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CCARGGCAATGCG
ACATGCCCGGGCAT----
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C G T C A C T G A C T A G C T A G A G T C C G T A G T C A C G A T A C T G A G T C A T C G
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T A C G T A C G T A C G T A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CCARGGCAATGCG----
---NNGCNCTGCGCGGC
 A G T C A G T C G T C A C T G A C T A G C T A G A G T C C G T A G T C A C G A T A C T G A G T C A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A A G T C C A T G G A T C T G C A G A T C C A G T A C T G A G T C C T A G A T G C C T A G C T A G G T A C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCARGGCAATGCG
-CAAGGHCANV--
 A G T C A G T C G T C A C T G A C T A G C T A G A G T C C G T A G T C A C G A T A C T G A G T C A T C G
A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CCARGGCAATGCG
WDNCTGGGCA-----
 A C G T A C G T A G T C A G T C G T C A C T G A C T A G C T A G A G T C C G T A G T C A C G A T A C T G A G T C A T C G
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:9
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CCARGGCAATGCG
----GACAATGNN
 A G T C A G T C G T C A C T G A C T A G C T A G A G T C C G T A G T C A C G A T A C T G A G T C A T C G
A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CCARGGCAATGCG
--VRRACAAWGG-
 A G T C A G T C G T C A C T G A C T A G C T A G A G T C C G T A G T C A C G A T A C T G A G T C A T C G
A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T