Information for 13-GAGGTRTCCARGT (Motif 18)

A T C G C G T A A C T G A T C G A C G T C T A G G C A T A G T C A G T C C G T A C T A G A T C G G A C T
Reverse Opposite:
C T G A A T G C A G T C A C G T C T A G A C T G C G T A A G T C G T C A A T G C A G T C C G A T A T G C
p-value:1e-10
log p-value:-2.504e+01
Information Content per bp:1.771
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.36%
Number of Background Sequences with motif25.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets54.5 +/- 20.5bp
Average Position of motif in Background44.2 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0158.1_Rfx3_2/Jaspar

Match Rank:1
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----GAGGTRTCCARGT------
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A C G T A T C G C G T A A C T G A T C G A C G T C T A G G C A T A G T C A G T C C G T A C T A G A T C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GAGGTRTCCARGT--
NNNGTAACTANGNNA
 A T C G C G T A A C T G A T C G A C G T C T A G G C A T A G T C A G T C C G T A C T A G A T C G G A C T A C G T A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GAGGTRTCCARGT--
NTNNCGTATCCAAGTNN
 A C G T A C G T A T C G C G T A A C T G A T C G A C G T C T A G G C A T A G T C A G T C C G T A C T A G A T C G G A C T A C G T A C G T
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAGGTRTCCARGT
-AGGTCTCTAACC
 A T C G C G T A A C T G A T C G A C G T C T A G G C A T A G T C A G T C C G T A C T A G A T C G G A C T
A C G T C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C

Bcl6/MA0463.1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GAGGTRTCCARGT--
-NGCTTTCTAGGAAN
 A T C G C G T A A C T G A T C G A C G T C T A G G C A T A G T C A G T C C G T A C T A G A T C G G A C T A C G T A C G T
A C G T C G A T C A T G G T A C G A C T A G C T G A C T A G T C A G C T C G T A C T A G C A T G T C G A G C T A G T C A

ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAGGTRTCCARGT
GTGGGCCCCA---
 A T C G C G T A A C T G A T C G A C G T C T A G G C A T A G T C A G T C C G T A C T A G A T C G G A C T
T A C G G A C T A C T G A C T G C T A G A T G C A G T C A G T C A G T C C T G A A C G T A C G T A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GAGGTRTCCARGT
--GTTAACTAGN-
 A T C G C G T A A C T G A T C G A C G T C T A G G C A T A G T C A G T C C G T A C T A G A T C G G A C T
A C G T A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GAGGTRTCCARGT--
GGGTGTGCCCAAAAGG
 A C G T A T C G C G T A A C T G A T C G A C G T C T A G G C A T A G T C A G T C C G T A C T A G A T C G G A C T A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GAGGTRTCCARGT
-AGGTGTCA----
 A T C G C G T A A C T G A T C G A C G T C T A G G C A T A G T C A G T C C G T A C T A G A T C G G A C T
A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T A C G T

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:10
Score:0.53
Offset:7
Orientation:forward strand
Alignment:GAGGTRTCCARGT----
-------VCAGGTRDRY
 A T C G C G T A A C T G A T C G A C G T C T A G G C A T A G T C A G T C C G T A C T A G A T C G G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C