Information for 1-CCACTAGGTGGCACYV (Motif 1)

A G T C A G T C G T C A A T G C G A C T C G T A A C T G C T A G A C G T A C T G A C T G A G T C C T G A A T G C G A C T T G C A
Reverse Opposite:
A C G T C T A G A T C G A G C T A C T G A G T C A G T C G T C A A G T C A G T C A C G T C G T A A T C G A C G T A C T G A C T G
p-value:1e-44
log p-value:-1.021e+02
Information Content per bp:1.799
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif5.57%
Number of Background Sequences with motif92.3
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets51.9 +/- 20.9bp
Average Position of motif in Background55.0 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.94
Offset:-3
Orientation:reverse strand
Alignment:---CCACTAGGTGGCACYV-
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C A G T C G T C A A T G C G A C T C G T A A C T G C T A G A C G T A C T G A C T G A G T C C T G A A T G C G A C T T G C A A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.93
Offset:-3
Orientation:forward strand
Alignment:---CCACTAGGTGGCACYV
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C A G T C G T C A A T G C G A C T C G T A A C T G C T A G A C G T A C T G A C T G A G T C C T G A A T G C G A C T T G C A
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-CCACTAGGTGGCACYV---
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C A G T C G T C A A T G C G A C T C G T A A C T G C T A G A C G T A C T G A C T G A G T C C T G A A T G C G A C T T G C A A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CCACTAGGTGGCACYV
-----GGTTGGCAT--
 A G T C A G T C G T C A A T G C G A C T C G T A A C T G C T A G A C G T A C T G A C T G A G T C C T G A A T G C G A C T T G C A
A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

Znf423/MA0116.1/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCACTAGGTGGCACYV
GCACCCCTGGGTGCC----
 A C G T A C G T A C G T A G T C A G T C G T C A A T G C G A C T C G T A A C T G C T A G A C G T A C T G A C T G A G T C C T G A A T G C G A C T T G C A
A C T G T G A C G T C A G T A C A G T C A G T C G A T C C G A T C T A G A C T G A C T G A C G T A C T G A T G C A G T C A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CCACTAGGTGGCACYV
-----NGTGGGCAT--
 A G T C A G T C G T C A A T G C G A C T C G T A A C T G C T A G A C G T A C T G A C T G A G T C C T G A A T G C G A C T T G C A
A C G T A C G T A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CCACTAGGTGGCACYV
-----AGGTGTCA---
 A G T C A G T C G T C A A T G C G A C T C G T A A C T G C T A G A C G T A C T G A C T G A G T C C T G A A T G C G A C T T G C A
A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCACTAGGTGGCACYV
--AACAGATGGC----
 A G T C A G T C G T C A A T G C G A C T C G T A A C T G C T A G A C G T A C T G A C T G A G T C C T G A A T G C G A C T T G C A
A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CCACTAGGTGGCACYV
---CAAGATGGCGGC-
 A G T C A G T C G T C A A T G C G A C T C G T A A C T G C T A G A C G T A C T G A C T G A G T C C T G A A T G C G A C T T G C A
A C G T A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCACTAGGTGGCACYV
CACCCCCGGGGGGG----
 A C G T A C G T A G T C A G T C G T C A A T G C G A C T C G T A A C T G C T A G A C G T A C T G A C T G A G T C C T G A A T G C G A C T T G C A
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G A C G T A C G T A C G T A C G T