Information for 9-GAAATGGCTT (Motif 20)

A C T G C T G A C T G A G C T A A C G T A C T G C T A G A G T C A C G T C G A T
Reverse Opposite:
G C T A G T C A A C T G G A T C A G T C G T C A C G A T A G C T A G C T T G A C
p-value:1e-8
log p-value:-1.889e+01
Information Content per bp:1.828
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.69%
Number of Background Sequences with motif112.1
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets51.1 +/- 25.1bp
Average Position of motif in Background48.6 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-GAAATGGCTT----
AGAAATGACTTCCCT
 A C G T A C T G C T G A C T G A G C T A A C G T A C T G C T A G A G T C A C G T C G A T A C G T A C G T A C G T A C G T
C T G A C T A G T G C A C T G A T C G A A G C T C A T G T C G A A G T C G A C T A C G T A G T C G A T C G A T C G A C T

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GAAATGGCTT-
CAAGATGGCGGC
 A C G T A C T G C T G A C T G A G C T A A C G T A C T G C T A G A G T C A C G T C G A T A C G T
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GAAATGGCTT--
-TAATGGCGGNC
 A C T G C T G A C T G A G C T A A C G T A C T G C T A G A G T C A C G T C G A T A C G T A C G T
A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAAATGGCTT
GTTAATGGCC-
 A C G T A C T G C T G A C T G A G C T A A C G T A C T G C T A G A G T C A C G T C G A T
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GAAATGGCTT-
AATNTTAAGTGGNTNN
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A C T G A G C T A A C G T A C T G C T A G A G T C A C G T C G A T A C G T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

Nr2e1/MA0676.1/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GAAATGGCTT--
---TTGACTTTT
 A C T G C T G A C T G A G C T A A C G T A C T G C T A G A G T C A C G T C G A T A C G T A C G T
A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T

PH0171.1_Nkx2-1/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GAAATGGCTT-
AANTTCAAGTGGCTTN
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A C T G A G C T A A C G T A C T G C T A G A G T C A C G T C G A T A C G T
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

PH0113.1_Nkx2-4/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GAAATGGCTT-
AATTTCAAGTGGCTTN
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A C T G A G C T A A C G T A C T G C T A G A G T C A C G T C G A T A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

PH0114.1_Nkx2-5/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GAAATGGCTT-
AAATTCAAGTGGNTTN
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A C T G A G C T A A C G T A C T G C T A G A G T C A C G T C G A T A C G T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GAAATGGCTT
NTAATKGTTT
 A C T G C T G A C T G A G C T A A C G T A C T G C T A G A G T C A C G T C G A T
A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T