Information for 6-CCGCAGCGCCACA (Motif 9)

A G T C A G T C A C T G A T G C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A G T C G T C A
Reverse Opposite:
A C G T A C T G A C G T A C T G A C T G A G T C A C T G A G T C A C G T A T C G A G T C C T A G C T A G
p-value:1e-10
log p-value:-2.471e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.8 +/- 23.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0113.1_E2F3_2/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCGCAGCGCCACA---
AGCTCGGCGCCAAAAGC
 A C G T A G T C A G T C A C T G A T G C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A G T C G T C A A C G T A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

PB0112.1_E2F2_2/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCGCAGCGCCACA---
CCTTCGGCGCCAAAAGG
 A C G T A G T C A G T C A C T G A T G C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A G T C G T C A A C G T A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

PB0164.1_Smad3_2/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCGCAGCGCCACA---
TACGCCCCGCCACTCTG
 A C G T A G T C A G T C A C T G A T G C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A G T C G T C A A C G T A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCGCAGCGCCACA
-CGGAGC------
 A G T C A G T C A C T G A T G C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A G T C G T C A
A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CCGCAGCGCCACA
---CAGCC-----
 A G T C A G T C A C T G A T G C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A G T C G T C A
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:6
Score:0.53
Offset:6
Orientation:forward strand
Alignment:CCGCAGCGCCACA
------ATCCAC-
 A G T C A G T C A C T G A T G C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CCGCAGCGCCACA---
----NWAACCACADNN
 A G T C A G T C A C T G A T G C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

E2F1/MA0024.3/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CCGCAGCGCCACA
-TTTGGCGCCAAA
 A G T C A G T C A C T G A T G C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A G T C G T C A
A C G T G C A T C G A T C A G T T C A G A T C G A T G C C T A G A T G C A T G C G C T A G C T A C G T A

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.52
Offset:7
Orientation:forward strand
Alignment:CCGCAGCGCCACA----
-------GCCACACCCA
 A G T C A G T C A C T G A T G C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A G T C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A

Sp1(Zf)/Promoter/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CCGCAGCGCCACA
-GGCCCCGCCCCC
 A G T C A G T C A C T G A T G C C G T A A C T G A G T C A C T G A G T C A G T C C G T A A G T C G T C A
A C G T T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C