Information for 2-GCAAGTCTGA (Motif 8)

A C T G A T G C G T C A T C G A C A T G G A C T A G T C A C G T A C T G C T G A
Reverse Opposite:
G A C T T G A C T G C A T C A G C T G A G A T C A G C T C A G T T A C G T G A C
p-value:1e-11
log p-value:-2.584e+01
Information Content per bp:1.536
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.25%
Number of Background Sequences with motif139.9
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets54.6 +/- 25.2bp
Average Position of motif in Background46.9 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GCAAGTCTGA
AAGGCAAGTGT--
 A C G T A C G T A C G T A C T G A T G C G T C A T C G A C A T G G A C T A G T C A C G T A C T G C T G A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCAAGTCTGA
-CAAGCTT--
 A C T G A T G C G T C A T C G A C A T G G A C T A G T C A C G T A C T G C T G A
A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCAAGTCTGA
GCACGTAY--
 A C T G A T G C G T C A T C G A C A T G G A C T A G T C A C G T A C T G C T G A
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCAAGTCTGA
--TWGTCTGV
 A C T G A T G C G T C A T C G A C A T G G A C T A G T C A C G T A C T G C T G A
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

TBX1/MA0805.1/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GCAAGTCTGA
--AGGTGTGA
 A C T G A T G C G T C A T C G A C A T G G A C T A G T C A C G T A C T G C T G A
A C G T A C G T C T G A T C A G A C T G A G C T A T C G G A C T A C T G T G C A

PB0146.1_Mafk_2/Jaspar

Match Rank:6
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GCAAGTCTGA-
CCTTGCAATTTTTNN
 A C G T A C G T A C G T A C G T A C T G A T G C G T C A T C G A C A T G G A C T A G T C A C G T A C T G C T G A A C G T
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

PB0165.1_Sox11_2/Jaspar

Match Rank:7
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------GCAAGTCTGA
NNCNNAACAATTNT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C G T C A T C G A C A T G G A C T A G T C A C G T A C T G C T G A
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GCAAGTCTGA
GCACGTNC--
 A C T G A T G C G T C A T C G A C A T G G A C T A G T C A C G T A C T G C T G A
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T

p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GCAAGTCTGA-------
NRRRCAWGTCCDGRCATGYY
 A C G T A C G T A C G T A C T G A T G C G T C A T C G A C A T G G A C T A G T C A C G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C T G A C T A G C T G A A G T C G C T A C G A T A T C G G A C T G A T C A G T C C T G A C T A G C T A G A G T C G C T A C G A T C T A G G A T C G A T C

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GCAAGTCTGA--
--AGGTGTGAAM
 A C T G A T G C G T C A T C G A C A T G G A C T A G T C A C G T A C T G C T G A A C G T A C G T
A C G T A C G T C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A