Information for 2-RRGWCWAGAGGGRAAS (Motif 5)

C T A G C T G A C T A G C G A T A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C T G C T A G C G T A C G T A A T C G
Reverse Opposite:
A T G C A C G T A C G T G A T C A G T C A G T C A G T C A C G T A G T C C G A T C G A T A C T G C G T A A G T C A G C T A G T C
p-value:1e-13
log p-value:-3.048e+01
Information Content per bp:1.848
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.2 +/- 17.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-RRGWCWAGAGGGRAAS
GAGGTCAAAAGGTCA--
 A C G T C T A G C T G A C T A G C G A T A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C T G C T A G C G T A C G T A A T C G
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A A C G T A C G T

Rarg/MA0859.1/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-RRGWCWAGAGGGRAAS
AAGGTCAAAAGGTCAA-
 A C G T C T A G C T G A C T A G C G A T A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C T G C T A G C G T A C G T A A T C G
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A A C G T

SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer

Match Rank:3
Score:0.57
Offset:6
Orientation:forward strand
Alignment:RRGWCWAGAGGGRAAS--
------AAAGRGGAAGTG
 C T A G C T G A C T A G C G A T A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C T G C T A G C G T A C G T A A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A C G T A C T A G T C G A C T A G A C T G C G T A C G T A T A C G A G C T A T C G

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.57
Offset:6
Orientation:forward strand
Alignment:RRGWCWAGAGGGRAAS
------GGCGGGAARN
 C T A G C T G A C T A G C G A T A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C T G C T A G C G T A C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:RRGWCWAGAGGGRAAS-
-----GAAAGTGAAAGT
 C T A G C T G A C T A G C G A T A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C T G C T A G C G T A C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

Rarb/MA0857.1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--RRGWCWAGAGGGRAAS
AAAGGTCAAAAGGTCA--
 A C G T A C G T C T A G C T G A C T A G C G A T A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C T G C T A G C G T A C G T A A T C G
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A A C G T A C G T

RARA/MA0729.1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-RRGWCWAGAGGGRAAS-
GAGGTCAAAAGGTCAATG
 A C G T C T A G C T G A C T A G C G A T A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C T G C T A G C G T A C G T A A T C G A C G T
C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G

SPIB/MA0081.1/Jaspar

Match Rank:8
Score:0.55
Offset:8
Orientation:forward strand
Alignment:RRGWCWAGAGGGRAAS
--------AGAGGAA-
 C T A G C T G A C T A G C G A T A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C T G C T A G C G T A C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T

E2F6/MA0471.1/Jaspar

Match Rank:9
Score:0.55
Offset:5
Orientation:forward strand
Alignment:RRGWCWAGAGGGRAAS
-----GGGCGGGAAGG
 C T A G C T G A C T A G C G A T A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C T G C T A G C G T A C G T A A T C G
A C G T A C G T A C G T A C G T A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G

PRDM1/MA0508.1/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:RRGWCWAGAGGGRAAS---
----AGAAAGTGAAAGTGA
 C T A G C T G A C T A G C G A T A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C T G C T A G C G T A C G T A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A