Information for 2-TCAATTCACT (Motif 9)

A C G T A G T C T C G A C T G A C G A T A G C T A G T C C G T A A T G C C G A T
Reverse Opposite:
C G T A T A C G A C G T A C T G C T G A G C T A G A C T A G C T A C T G G T C A
p-value:1e-11
log p-value:-2.535e+01
Information Content per bp:1.833
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.74%
Number of Background Sequences with motif72.0
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets43.9 +/- 27.4bp
Average Position of motif in Background51.4 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0068.1_Sox1_1/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--TCAATTCACT----
AATCAATTCAATAATT
 A C G T A C G T A C G T A G T C T C G A C T G A C G A T A G C T A G T C C G T A A T G C C G A T A C G T A C G T A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TCAATTCACT--
NNNNTGAATTCANNNC
 A C G T A C G T A C G T A C G T A C G T A G T C T C G A C T G A C G A T A G C T A G T C C G T A A T G C C G A T A C G T A C G T
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

FOXH1/MA0479.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TCAATTCACT
TCCAATCCACA
 A C G T A C G T A G T C T C G A C T G A C G A T A G C T A G T C C G T A A T G C C G A T
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

Gfi1/MA0038.1/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TCAATTCACT-
-CAAATCACTG
 A C G T A G T C T C G A C T G A C G A T A G C T A G T C C G T A A T G C C G A T A C G T
A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TCAATTCACT--
SSAATCCACANN
 A C G T A G T C T C G A C T G A C G A T A G C T A G T C C G T A A T G C C G A T A C G T A C G T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

PB0066.1_Sox17_1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TCAATTCACT-
ATAAACAATTAAACA
 A C G T A C G T A C G T A C G T A C G T A G T C T C G A C T G A C G A T A G C T A G T C C G T A A T G C C G A T A C G T
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

PB0005.1_Bbx_1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TCAATTCACT------
-TAATTCAATGAAGTG
 A C G T A G T C T C G A C T G A C G A T A G C T A G T C C G T A A T G C C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:8
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TCAATTCACT
HNRAATCAAT-----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C T C G A C T G A C G A T A G C T A G T C C G T A A T G C C G A T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TCAATTCACT--
NNCATTCATTCATNNN
 A C G T A C G T A C G T A C G T A C G T A G T C T C G A C T G A C G A T A G C T A G T C C G T A A T G C C G A T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

POL002.1_INR/Jaspar

Match Rank:10
Score:0.58
Offset:5
Orientation:forward strand
Alignment:TCAATTCACT---
-----TCAGTCTT
 A C G T A G T C T C G A C T G A C G A T A G C T A G T C C G T A A T G C C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T