Information for 1-CAGAAGTAAGAGACAG (Motif 3)

A T G C C G T A A C T G C T G A C G T A C T A G A C G T G T C A C G T A A C T G C G T A A C T G T C G A A G T C C G T A A C T G
Reverse Opposite:
A G T C C G A T A C T G A C G T A G T C A C G T A G T C A C G T A C G T G T C A A G T C A C G T A G C T A G T C C G A T A T C G
p-value:1e-13
log p-value:-3.065e+01
Information Content per bp:1.859
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.0 +/- 33.9bp
Average Position of motif in Background66.4 +/- 24.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CAGAAGTAAGAGACAG
---AGGTGNCAGACAG
 A T G C C G T A A C T G C T G A C G T A C T A G A C G T G T C A C G T A A C T G C G T A A C T G T C G A A G T C C G T A A C T G
A C G T A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------CAGAAGTAAGAGACAG
SMCAGTCWGAKGGAGGAGGC--
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A A C T G C T G A C G T A C T A G A C G T G T C A C G T A A C T G C G T A A C T G T C G A A G T C C G T A A C T G
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CAGAAGTAAGAGACAG
---AGGTGHCAGACA-
 A T G C C G T A A C T G C T G A C G T A C T A G A C G T G T C A C G T A A C T G C G T A A C T G T C G A A G T C C G T A A C T G
A C G T A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CAGAAGTAAGAGACAG-
-----GAAAGTGAAAGT
 A T G C C G T A A C T G C T G A C G T A C T A G A C G T G T C A C G T A A C T G C G T A A C T G T C G A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAGAAGTAAGAGACAG
CGGAAGTGAAAC----
 A T G C C G T A A C T G C T G A C G T A C T A G A C G T G T C A C G T A A C T G C G T A A C T G T C G A A G T C C G T A A C T G
T G A C C T A G T C A G G T C A C G T A T C A G C G A T T C A G T C G A T G C A C T G A T A G C A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:6
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:CAGAAGTAAGAGACAG--
------TGAGTGACAGSC
 A T G C C G T A A C T G C T G A C G T A C T A G A C G T G T C A C G T A A C T G C G T A A C T G T C G A A G T C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

PRDM1/MA0508.1/Jaspar

Match Rank:7
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CAGAAGTAAGAGACAG---
----AGAAAGTGAAAGTGA
 A T G C C G T A A C T G C T G A C G T A C T A G A C G T G T C A C G T A A C T G C G T A A C T G T C G A A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:CAGAAGTAAGAGACAG-
-----NTGATTGACAGN
 A T G C C G T A A C T G C T G A C G T A C T A G A C G T G T C A C G T A A C T G C G T A A C T G T C G A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:9
Score:0.50
Offset:2
Orientation:forward strand
Alignment:CAGAAGTAAGAGACAG
--GWAAYHTGAKMC--
 A T G C C G T A A C T G C T G A C G T A C T A G A C G T G T C A C G T A A C T G C G T A A C T G T C G A A G T C C G T A A C T G
A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:10
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:CAGAAGTAAGAGACAG
--GWAAYHTGABMC--
 A T G C C G T A A C T G C T G A C G T A C T A G A C G T G T C A C G T A A C T G C G T A A C T G T C G A A G T C C G T A A C T G
A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C A C G T A C G T