Information for 1-GGGAATTYCCCWYTTH (Motif 1)

A C T G C T A G A T C G C T G A C G T A G C A T A C G T G A T C G T A C G T A C A G T C G C A T G A T C A G C T A C G T G T A C
Reverse Opposite:
C A T G T G C A C T G A C T A G C G T A C T A G A C T G A C T G C T A G G T C A C G T A C G A T G A C T A T G C A G T C G T A C
p-value:1e-24
log p-value:-5.737e+01
Information Content per bp:1.660
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif3.24%
Number of Background Sequences with motif51.6
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets46.4 +/- 13.2bp
Average Position of motif in Background45.3 +/- 23.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:GGGAATTYCCCWYTTH
GGGAAATCCCCN----
 A C T G C T A G A T C G C T G A C G T A G C A T A C G T G A T C G T A C G T A C A G T C G C A T G A T C A G C T A C G T G T A C
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:2
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-GGGAATTYCCCWYTTH
AGGGGATTCCCCT----
 A C G T A C T G C T A G A T C G C T G A C G T A G C A T A C G T G A T C G T A C G T A C A G T C G C A T G A T C A G C T A C G T G T A C
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T A C G T A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.81
Offset:0
Orientation:forward strand
Alignment:GGGAATTYCCCWYTTH
GGGGATTTCC------
 A C T G C T A G A T C G C T G A C G T A G C A T A C G T G A T C G T A C G T A C A G T C G C A T G A T C A G C T A C G T G T A C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:4
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:GGGAATTYCCCWYTTH
GGGGATTCCCCC----
 A C T G C T A G A T C G C T G A C G T A G C A T A C G T G A T C G T A C G T A C A G T C G C A T G A T C A G C T A C G T G T A C
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C A C G T A C G T A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:5
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-GGGAATTYCCCWYTTH
AGGGGATTCCCCT----
 A C G T A C T G C T A G A T C G C T G A C G T A G C A T A C G T G A T C G T A C G T A C A G T C G C A T G A T C A G C T A C G T G T A C
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T A C G T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:6
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GGGAATTYCCCWYTTH
GGGAATTTCC------
 A C T G C T A G A T C G C T G A C G T A G C A T A C G T G A T C G T A C G T A C A G T C G C A T G A T C A G C T A C G T G T A C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:GGGAATTYCCCWYTTH
GGGAATTTCC------
 A C T G C T A G A T C G C T G A C G T A G C A T A C G T G A T C G T A C G T A C A G T C G C A T G A T C A G C T A C G T G T A C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:8
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GGGAATTYCCCWYTTH
GGGGATTTCC------
 A C T G C T A G A T C G C T G A C G T A G C A T A C G T G A T C G T A C G T A C A G T C G C A T G A T C A G C T A C G T G T A C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:9
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:GGGAATTYCCCWYTTH
------TCCCCA----
 A C T G C T A G A T C G C T G A C G T A G C A T A C G T G A T C G T A C G T A C A G T C G C A T G A T C A G C T A C G T G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A A C G T A C G T A C G T A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:10
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GGGAATTYCCCWYTTH
-----TTCCCCCTAC-
 A C T G C T A G A T C G C T G A C G T A G C A T A C G T G A T C G T A C G T A C A G T C G C A T G A T C A G C T A C G T G T A C
A C G T A C G T A C G T A C G T A C G T A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C A C G T