Information for 4-KGSCMCATAGTSG (Motif 5)

A C G T A C T G A T G C G T A C G T C A A G T C G T C A A C G T C G T A A C T G A C G T A T C G A C T G
Reverse Opposite:
A G T C A T G C C G T A A G T C C G A T C G T A A C G T A C T G A C G T A C T G A T C G A G T C G T C A
p-value:1e-12
log p-value:-2.895e+01
Information Content per bp:1.870
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.3 +/- 18.0bp
Average Position of motif in Background94.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----KGSCMCATAGTSG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C G T A C G T C A A G T C G T C A A C G T C G T A A C T G A C G T A T C G A C T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---KGSCMCATAGTSG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C T G A T G C G T A C G T C A A G T C G T C A A C G T C G T A A C T G A C G T A T C G A C T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------KGSCMCATAGTSG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C G T A C G T C A A G T C G T C A A C G T C G T A A C T G A C G T A T C G A C T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

PB0132.1_Hbp1_2/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-KGSCMCATAGTSG---
TGTTCCCATTGTGTACT
 A C G T A C G T A C T G A T G C G T A C G T C A A G T C G T C A A C G T C G T A A C T G A C G T A T C G A C T G A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Sox17/MA0078.1/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:KGSCMCATAGTSG
---CTCATTGTC-
 A C G T A C T G A T G C G T A C G T C A A G T C G T C A A C G T C G T A A C T G A C G T A T C G A C T G
A C G T A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T

PB0128.1_Gcm1_2/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:KGSCMCATAGTSG-----
-TGCGCATAGGGGAGGAG
 A C G T A C T G A T G C G T A C G T C A A G T C G T C A A C G T C G T A A C T G A C G T A T C G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C A T G A T G C T A C G G T A C T C G A A G C T T C G A C A T G A C T G A C T G A C T G T C G A A T C G T C A G G T C A A C T G

DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-KGSCMCATAGTSG-
YDGHTACAWTGTADC
 A C G T A C G T A C T G A T G C G T A C G T C A A G T C G T C A A C G T C G T A A C T G A C G T A T C G A C T G A C G T
G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C

DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-KGSCMCATAGTSG-
TWGHWACAWTGTWDC
 A C G T A C G T A C T G A T G C G T A C G T C A A G T C G T C A A C G T C G T A A C T G A C G T A T C G A C T G A C G T
G C A T C G A T C T A G G C T A G C A T C G T A G A T C G C T A C G A T C G A T C T A G C G A T C G T A C G A T G A T C

PB0168.1_Sox14_2/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:KGSCMCATAGTSG---
-NNNCCATTGTGTNAN
 A C G T A C T G A T G C G T A C G T C A A G T C G T C A A C G T C G T A A C T G A C G T A T C G A C T G A C G T A C G T A C G T
A C G T A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-KGSCMCATAGTSG
AGGVNCCTTTGT--
 A C G T A C G T A C T G A T G C G T A C G T C A A G T C G T C A A C G T C G T A A C T G A C G T A T C G A C T G
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T