Information for 13-GCTGCGGGTGAAG (Motif 22)

A C T G G T A C A C G T A C T G G T A C A C T G A C T G A C T G A C G T A C T G C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A G T C C G T A A G T C A G T C G T A C A C T G A G T C C G T A A C T G A G T C
p-value:1e-8
log p-value:-2.040e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.8 +/- 12.0bp
Average Position of motif in Background74.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GCM2/MA0767.1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCTGCGGGTGAAG
TATGCGGGTA---
 A C T G G T A C A C G T A C T G G T A C A C T G A C T G A C T G A C G T A C T G C G T A C G T A A C T G
A C G T T C G A A G C T T C A G A T G C C A T G A C T G C T A G G A C T C T G A A C G T A C G T A C G T

GCM1/MA0646.1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCTGCGGGTGAAG
CATGCGGGTAC--
 A C T G G T A C A C G T A C T G G T A C A C T G A C T G A C T G A C G T A C T G C G T A C G T A A C T G
A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C A C G T A C G T

PB0024.1_Gcm1_1/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GCTGCGGGTGAAG
NNNNATGCGGGTNNNN
 A C G T A C G T A C G T A C T G G T A C A C G T A C T G G T A C A C T G A C T G A C T G A C G T A C T G C G T A C G T A A C T G
G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:GCTGCGGGTGAAG-
--------NGAAGC
 A C T G G T A C A C G T A C T G G T A C A C T G A C T G A C T G A C G T A C T G C G T A C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCTGCGGGTGAAG--
CGCGCCGGGTCACGTA
 A C G T A C T G G T A C A C G T A C T G G T A C A C T G A C T G A C T G A C G T A C T G C G T A C G T A A C T G A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GCTGCGGGTGAAG--
SMCAGTCWGAKGGAGGAGGC
 A C G T A C G T A C G T A C G T A C G T A C T G G T A C A C G T A C T G G T A C A C T G A C T G A C T G A C G T A C T G C G T A C G T A A C T G A C G T A C G T
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCTGCGGGTGAAG
-SDGCAGGTGCNS
 A C T G G T A C A C G T A C T G G T A C A C T G A C T G A C T G A C G T A C T G C G T A C G T A A C T G
A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

PB0157.1_Rara_2/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GCTGCGGGTGAAG--
AGAGCGGGGTCAAGTA
 A C G T A C T G G T A C A C G T A C T G G T A C A C T G A C T G A C T G A C G T A C T G C G T A C G T A A C T G A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GCTGCGGGTGAAG-
--RGKGGGCGGAGC
 A C T G G T A C A C G T A C T G G T A C A C T G A C T G A C T G A C G T A C T G C G T A C G T A A C T G A C G T
A C G T A C G T C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GCTGCGGGTGAAG
--NNCAGGTGNN-
 A C T G G T A C A C G T A C T G G T A C A C T G A C T G A C T G A C G T A C T G C G T A C G T A A C T G
A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G A C G T