Information for 7-CCAARGMCCATMM (Motif 12)

A G T C A G T C C G T A C T G A C T A G A C T G G T A C A G T C A G T C C G T A A C G T G T A C G T C A
Reverse Opposite:
A C G T A C T G G T C A A C G T A C T G A C T G A C T G G T A C A G T C A G C T A C G T A C T G A C T G
p-value:1e-11
log p-value:-2.584e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets36.2 +/- 29.1bp
Average Position of motif in Background30.0 +/- 20.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:1
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------CCAARGMCCATMM
CANAGNNCAAAGTCCA---
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C T G A C T A G A C T G G T A C A G T C A G T C C G T A A C G T G T A C G T C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CCAARGMCCATMM
AGAGTCCAAAGTCCA---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C T G A C T A G A C T G G T A C A G T C A G T C C G T A A C G T G T A C G T C A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCAARGMCCATMM
NTCAAGGTCA----
 A C G T A G T C A G T C C G T A C T G A C T A G A C T G G T A C A G T C A G T C C G T A A C G T G T A C G T C A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCAARGMCCATMM-
GGCAAAAGTCCAATAA
 A C G T A C G T A G T C A G T C C G T A C T G A C T A G A C T G G T A C A G T C A G T C C G T A A C G T G T A C G T C A A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCAARGMCCATMM
-CAAGGHCANV--
 A G T C A G T C C G T A C T G A C T A G A C T G G T A C A G T C A G T C C G T A A C G T G T A C G T C A
A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCAARGMCCATMM
BTCAAGGTCA----
 A C G T A G T C A G T C C G T A C T G A C T A G A C T G G T A C A G T C A G T C C G T A A C G T G T A C G T C A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCAARGMCCATMM
-CAAAGGTCAG--
 A G T C A G T C C G T A C T G A C T A G A C T G G T A C A G T C A G T C C G T A A C G T G T A C G T C A
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCAARGMCCATMM
TGCCAA---------
 A C G T A C G T A G T C A G T C C G T A C T G A C T A G A C T G G T A C A G T C A G T C C G T A A C G T G T A C G T C A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCAARGMCCATMM
GGGGTCAAAGTCCAAT-
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A C T G A C T A G A C T G G T A C A G T C A G T C C G T A A C G T G T A C G T C A
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T A C G T

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CCAARGMCCATMM----
CATAAGACCACCATTAC
 A G T C A G T C C G T A C T G A C T A G A C T G G T A C A G T C A G T C C G T A A C G T G T A C G T C A A C G T A C G T A C G T A C G T
A G T C C G A T C A G T C T G A T G C A A C T G G T C A G A T C A T G C G T C A G A T C G A T C G C T A A C G T C A G T C T G A A G C T