Information for 1-KSDGGGRTTTYCCCCA (Motif 1)

A C T G A T G C C G T A C T A G C T A G A C T G C T A G C G A T C G A T A C G T A G C T A G T C A G T C A G T C G T A C C G T A
Reverse Opposite:
G C A T C A T G C T A G A C T G C T A G C T G A C G T A C G T A G C T A A G T C G T A C A G T C G A T C G A C T T A C G T G A C
p-value:1e-30
log p-value:-7.036e+01
Information Content per bp:1.678
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif3.59%
Number of Background Sequences with motif40.9
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets55.6 +/- 17.8bp
Average Position of motif in Background60.7 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:1
Score:0.87
Offset:3
Orientation:reverse strand
Alignment:KSDGGGRTTTYCCCCA
---GGGGATTCCCCC-
 A C T G A T G C C G T A C T A G C T A G A C T G C T A G C G A T C G A T A C G T A G C T A G T C A G T C A G T C G T A C C G T A
A C G T A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.87
Offset:2
Orientation:forward strand
Alignment:KSDGGGRTTTYCCCCA
--NGGGGATTTCCC--
 A C T G A T G C C G T A C T A G C T A G A C T G C T A G C G A T C G A T A C G T A G C T A G T C A G T C A G T C G T A C C G T A
A C G T A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.87
Offset:3
Orientation:forward strand
Alignment:KSDGGGRTTTYCCCCA
---GGGGATTTCC---
 A C T G A T G C C G T A C T A G C T A G A C T G C T A G C G A T C G A T A C G T A G C T A G T C A G T C A G T C G T A C C G T A
A C G T A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:4
Score:0.84
Offset:2
Orientation:forward strand
Alignment:KSDGGGRTTTYCCCCA
--AGGGGATTCCCCT-
 A C T G A T G C C G T A C T A G C T A G A C T G C T A G C G A T C G A T A C G T A G C T A G T C A G T C A G T C G T A C C G T A
A C G T A C G T T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T A C G T

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.83
Offset:3
Orientation:forward strand
Alignment:KSDGGGRTTTYCCCCA
---GGGAATTTCC---
 A C T G A T G C C G T A C T A G C T A G A C T G C T A G C G A T C G A T A C G T A G C T A G T C A G T C A G T C G T A C C G T A
A C G T A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:6
Score:0.80
Offset:3
Orientation:forward strand
Alignment:KSDGGGRTTTYCCCCA
---GGGGATTTCC---
 A C T G A T G C C G T A C T A G C T A G A C T G C T A G C G A T C G A T A C G T A G C T A G T C A G T C A G T C G T A C C G T A
A C G T A C G T A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.79
Offset:3
Orientation:reverse strand
Alignment:KSDGGGRTTTYCCCCA
---GGGAATTTCC---
 A C T G A T G C C G T A C T A G C T A G A C T G C T A G C G A T C G A T A C G T A G C T A G T C A G T C A G T C G T A C C G T A
A C G T A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:KSDGGGRTTTYCCCCA
--AGGGGATTCCCCT-
 A C T G A T G C C G T A C T A G C T A G A C T G C T A G C G A T C G A T A C G T A G C T A G T C A G T C A G T C G T A C C G T A
A C G T A C G T T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:9
Score:0.62
Offset:10
Orientation:reverse strand
Alignment:KSDGGGRTTTYCCCCA
----------TCCCCA
 A C T G A T G C C G T A C T A G C T A G A C T G C T A G C G A T C G A T A C G T A G C T A G T C A G T C A G T C G T A C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:10
Score:0.59
Offset:8
Orientation:reverse strand
Alignment:KSDGGGRTTTYCCCCA--
--------TTCCCCCTAC
 A C T G A T G C C G T A C T A G C T A G A C T G C T A G C G A T C G A T A C G T A G C T A G T C A G T C A G T C G T A C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C