Information for 9-CTGCAGGTGC (Motif 26)

A G T C C A G T A C T G A T G C G C T A C T A G A C T G C A G T C A T G T A G C
Reverse Opposite:
A T C G G T A C G T C A T G A C G A T C C G A T A T C G T G A C G T C A C T A G
p-value:1e-5
log p-value:-1.199e+01
Information Content per bp:1.688
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif7.17%
Number of Background Sequences with motif1743.3
Percentage of Background Sequences with motif3.51%
Average Position of motif in Targets47.7 +/- 28.4bp
Average Position of motif in Background49.3 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:CTGCAGGTGC--
SDGCAGGTGCNS
 A G T C C A G T A C T G A T G C G C T A C T A G A C T G C A G T C A T G T A G C A C G T A C G T
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

TCF4/MA0830.1/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:CTGCAGGTGC-
-NNCAGGTGCG
 A G T C C A G T A C T G A T G C G C T A C T A G A C T G C A G T C A T G T A G C A C G T
A C G T G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:3
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CTGCAGGTGC-----
ATCCACAGGTGCGAAAA
 A C G T A C G T A G T C C A G T A C T G A T G C G C T A C T A G A C T G C A G T C A T G T A G C A C G T A C G T A C G T A C G T A C G T
T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:CTGCAGGTGC-
-NNCAGGTGNN
 A G T C C A G T A C T G A T G C G C T A C T A G A C T G C A G T C A T G T A G C A C G T
A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G

TCF3/MA0522.2/Jaspar

Match Rank:5
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CTGCAGGTGC-
-NNCAGGTGTN
 A G T C C A G T A C T G A T G C G C T A C T A G A C T G C A G T C A T G T A G C A C G T
A C G T G T C A T C A G A G T C C G T A A T C G T A C G C G A T A C T G A G C T C A G T

ID4/MA0824.1/Jaspar

Match Rank:6
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CTGCAGGTGC-
-GACAGGTGTN
 A G T C C A G T A C T G A T G C G C T A C T A G A C T G C A G T C A T G T A G C A C G T
A C G T C T A G T C G A A G T C C G T A A T C G A T C G A G C T A C T G A G C T G T C A

SNAI2/MA0745.1/Jaspar

Match Rank:7
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CTGCAGGTGC
-AACAGGTGT
 A G T C C A G T A C T G A T G C G C T A C T A G A C T G C A G T C A T G T A G C
A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CTGCAGGTGC--
DCHCAGCAGGRGGCC
 A C G T A C G T A C G T A G T C C A G T A C T G A T G C G C T A C T A G A C T G C A G T C A T G T A G C A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

NHLH1/MA0048.2/Jaspar

Match Rank:9
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CTGCAGGTGC-
-CGCAGCTGCG
 A G T C C A G T A C T G A T G C G C T A C T A G A C T G C A G T C A T G T A G C A C G T
A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G

PB0003.1_Ascl2_1/Jaspar

Match Rank:10
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CTGCAGGTGC-----
CTCAGCAGCTGCTACTG
 A C G T A C G T A G T C C A G T A C T G A T G C G C T A C T A G A C T G C A G T C A T G T A G C A C G T A C G T A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G