Information for 4-GGGAAATCCC (Motif 9)

A C T G A C T G A C T G C G T A T C G A C T G A G A C T A G T C A G T C A G T C
Reverse Opposite:
T A C G A C T G A C T G C G T A A G C T A C G T A C G T A G T C A G T C A G T C
p-value:1e-13
log p-value:-3.149e+01
Information Content per bp:1.835
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.01%
Number of Background Sequences with motif12.3
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets51.5 +/- 24.2bp
Average Position of motif in Background42.1 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:GGGAAATCCC--
GGGAAATCCCCN
 A C T G A C T G A C T G C G T A T C G A C T G A G A C T A G T C A G T C A G T C A C G T A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:GGGAAATCCC
GGAAATCCCC
 A C T G A C T G A C T G C G T A T C G A C T G A G A C T A G T C A G T C A G T C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:GGGAAATCCC-
-GGAAANCCCC
 A C T G A C T G A C T G C G T A T C G A C T G A G A C T A G T C A G T C A G T C A C G T
A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:GGGAAATCCC-
-GGAAATTCCC
 A C T G A C T G A C T G C G T A T C G A C T G A G A C T A G T C A G T C A G T C A C G T
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

NFKB2/MA0778.1/Jaspar

Match Rank:5
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GGGAAATCCC--
AGGGGAATCCCCT
 A C G T A C T G A C T G A C T G C G T A T C G A C T G A G A C T A G T C A G T C A G T C A C G T A C G T
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GGGAAATCCC
GGAAATTCCC
 A C T G A C T G A C T G C G T A T C G A C T G A G A C T A G T C A G T C A G T C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-GGGAAATCCC-
GGGGGAATCCCC
 A C G T A C T G A C T G A C T G C G T A T C G A C T G A G A C T A G T C A G T C A G T C A C G T
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-GGGAAATCCC--
AGGGGATTCCCCT
 A C G T A C T G A C T G A C T G C G T A T C G A C T G A G A C T A G T C A G T C A G T C A C G T A C G T
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

PH0015.1_Crx/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GGGAAATCCC-----
AGGCTAATCCCCAANG
 A C G T A C T G A C T G A C T G C G T A T C G A C T G A G A C T A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GGGAAATCCC
CSTGGGAAAD---
 A C G T A C G T A C G T A C T G A C T G A C T G C G T A T C G A C T G A G A C T A G T C A G T C A G T C
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T A C G T A C G T