Information for 3-CAAAATGGCG (Motif 4)

A T G C C T G A G T C A T C G A T C G A A G C T T C A G C A T G T G A C C A T G
Reverse Opposite:
G T A C A C T G G T A C A G T C T C G A A G C T A G C T A C G T G A C T T A C G
p-value:1e-15
log p-value:-3.459e+01
Information Content per bp:1.655
Number of Target Sequences with motif78.0
Percentage of Target Sequences with motif8.89%
Number of Background Sequences with motif1470.3
Percentage of Background Sequences with motif3.16%
Average Position of motif in Targets47.6 +/- 23.1bp
Average Position of motif in Background51.8 +/- 32.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.89
Offset:0
Orientation:forward strand
Alignment:CAAAATGGCG--
CAAGATGGCGGC
 A T G C C T G A G T C A T C G A T C G A A G C T T C A G C A T G T G A C C A T G A C G T A C G T
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.84
Offset:0
Orientation:forward strand
Alignment:CAAAATGGCG--
CAAGATGGCGGC
 A T G C C T G A G T C A T C G A T C G A A G C T T C A G C A T G T G A C C A T G A C G T A C G T
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:CAAAATGGCG---
--TAATGGCGGNC
 A T G C C T G A G T C A T C G A T C G A A G C T T C A G C A T G T G A C C A T G A C G T A C G T A C G T
A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

E2F2/MA0864.1/Jaspar

Match Rank:4
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CAAAATGGCG-------
-AAAATGGCGCCATTTT
 A T G C C T G A G T C A T C G A T C G A A G C T T C A G C A T G T G A C C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C A T G C G C T A G C A T C G A T C G A T G C A T

E2F3/MA0469.2/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CAAAATGGCG--------
AAAAATGGCGCCATTTTT
 A T G C C T G A G T C A T C G A T C G A A G C T T C A G C A T G T G A C C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T C G A C G T A C G T A C G T A C A G T A T C G A T C G A G T C A T C G A G T C T A G C G T C A G C A T C G A T G C A T A G C T A G C T

PB0132.1_Hbp1_2/Jaspar

Match Rank:6
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----CAAAATGGCG---
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C G T A T G C C T G A G T C A T C G A T C G A A G C T T C A G C A T G T G A C C A T G A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

PB0168.1_Sox14_2/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CAAAATGGCG-
CTCACACAATGGCGC
 A C G T A C G T A C G T A C G T A T G C C T G A G T C A T C G A T C G A A G C T T C A G C A T G T G A C C A T G A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CAAAATGGCG
AACAAAGG--
 A T G C C T G A G T C A T C G A T C G A A G C T T C A G C A T G T G A C C A T G
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CAAAATGGCG-------
NAGANTGGCGGGGNGNA
 A T G C C T G A G T C A T C G A T C G A A G C T T C A G C A T G T G A C C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CAAAATGGCG
RACAAWGG--
 A T G C C T G A G T C A T C G A T C G A A G C T T C A G C A T G T G A C C A T G
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T