Information for 1-AGAGAGGCACTTC (Motif 2)

G C T A A C T G T C G A C T A G C T G A A T C G A T C G A G T C T C G A A T G C A C G T A C G T A T G C
Reverse Opposite:
T A C G T C G A G T C A T A C G A G C T A C T G A T G C T A G C A G C T A G T C A G C T A G T C C G A T
p-value:1e-15
log p-value:-3.550e+01
Information Content per bp:1.772
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.28%
Number of Background Sequences with motif81.1
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets43.0 +/- 25.8bp
Average Position of motif in Background50.7 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-8/MA0673.1/Jaspar

Match Rank:1
Score:0.57
Offset:6
Orientation:forward strand
Alignment:AGAGAGGCACTTC--
------CCACTTGAA
 G C T A A C T G T C G A C T A G C T G A A T C G A T C G A G T C T C G A A T G C A C G T A C G T A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AGAGAGGCACTTC-
----AAGCACTTAA
 G C T A A C T G T C G A C T A G C T G A A T C G A T C G A G T C T C G A A T G C A C G T A C G T A T G C A C G T
A C G T A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

PB0114.1_Egr1_2/Jaspar

Match Rank:3
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGAGAGGCACTTC
TGCGGAGTGGGACTGG
 A C G T A C G T A C G T G C T A A C T G T C G A C T A G C T G A A T C G A T C G A G T C T C G A A T G C A C G T A C G T A T G C
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

NKX2-3/MA0672.1/Jaspar

Match Rank:4
Score:0.55
Offset:5
Orientation:forward strand
Alignment:AGAGAGGCACTTC--
-----ACCACTTGAA
 G C T A A C T G T C G A C T A G C T G A A T C G A T C G A G T C T C G A A T G C A C G T A C G T A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AGAGAGGCACTTC-
----AASCACTCAA
 G C T A A C T G T C G A C T A G C T G A A T C G A T C G A G T C T C G A A T G C A C G T A C G T A T G C A C G T
A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:AGAGAGGCACTTC-
----MRSCACTYAA
 G C T A A C T G T C G A C T A G C T G A A T C G A T C G A G T C T C G A A T G C A C G T A C G T A T G C A C G T
A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AGAGAGGCACTTC-
AGGGAAGTCATTTCT
 A C G T G C T A A C T G T C G A C T A G C T G A A T C G A T C G A G T C T C G A A T G C A C G T A C G T A T G C A C G T
C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.53
Offset:5
Orientation:forward strand
Alignment:AGAGAGGCACTTC--
-----RSCACTYRAG
 G C T A A C T G T C G A C T A G C T G A A T C G A T C G A G T C T C G A A T G C A C G T A C G T A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

PH0114.1_Nkx2-5/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AGAGAGGCACTTC-----
--TAAGCCACTTGAATTT
 G C T A A C T G T C G A C T A G C T G A A T C G A T C G A G T C T C G A A T G C A C G T A C G T A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AGAGAGGCACTTC
CTTGAGTGGCT----
 A C G T A C G T G C T A A C T G T C G A C T A G C T G A A T C G A T C G A G T C T C G A A T G C A C G T A C G T A T G C
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T A C G T