Information for 5-TGTGGTTWCC (Motif 5)

G C A T A T C G A G C T C T A G A C T G A C G T A G C T C G A T T G A C G T A C
Reverse Opposite:
C A T G A C T G G C T A T C G A C G T A A G T C G A T C T C G A T A G C C G T A
p-value:1e-22
log p-value:-5.163e+01
Information Content per bp:1.663
Number of Target Sequences with motif93.0
Percentage of Target Sequences with motif10.62%
Number of Background Sequences with motif1500.4
Percentage of Background Sequences with motif3.22%
Average Position of motif in Targets44.4 +/- 26.2bp
Average Position of motif in Background51.1 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:1
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-TGTGGTTWCC
CTGTGGTTTN-
 A C G T G C A T A T C G A G C T C T A G A C T G A C G T A G C T C G A T T G A C G T A C
G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:2
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--TGTGGTTWCC
NNTGTGGTTT--
 A C G T A C G T G C A T A T C G A G C T C T A G A C T G A C G T A G C T C G A T T G A C G T A C
A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--TGTGGTTWCC
GCTGTGGTTT--
 A C G T A C G T G C A T A T C G A G C T C T A G A C T G A C G T A G C T C G A T T G A C G T A C
A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T A C G T

RUNX2/MA0511.2/Jaspar

Match Rank:4
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-TGTGGTTWCC
TTGCGGTTT--
 A C G T G C A T A T C G A G C T C T A G A C T G A C G T A G C T C G A T T G A C G T A C
A G C T A C G T A C T G G A T C A C T G A C T G A C G T G A C T C G A T A C G T A C G T

RUNX3/MA0684.1/Jaspar

Match Rank:5
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--TGTGGTTWCC
TTTGCGGTTT--
 A C G T A C G T G C A T A T C G A G C T C T A G A C T G A C G T A G C T C G A T T G A C G T A C
C G A T A G C T A C G T T A C G A G T C A T C G A C T G A C G T A G C T C G A T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:6
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---TGTGGTTWCC
GTCTGTGGTTT--
 A C G T A C G T A C G T G C A T A T C G A G C T C T A G A C T G A C G T A G C T C G A T T G A C G T A C
A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---TGTGGTTWCC
NNHTGTGGTTWN-
 A C G T A C G T A C G T G C A T A T C G A G C T C T A G A C T G A C G T A G C T C G A T T G A C G T A C
C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TGTGGTTWCC--
--TGGTTTCAGT
 G C A T A T C G A G C T C T A G A C T G A C G T A G C T C G A T T G A C G T A C A C G T A C G T
A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T

PB0034.1_Irf4_1/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGTGGTTWCC-----
TNTGGTTTCGATACN
 G C A T A T C G A G C T C T A G A C T G A C G T A G C T C G A T T G A C G T A C A C G T A C G T A C G T A C G T A C G T
G C A T A C G T G A C T C T A G A T C G C G A T C G A T A C G T A G T C C T A G C T G A G C A T G C T A G A T C A C T G

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:10
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TGTGGTTWCC
GKMTCADRTTWC-
 A C G T A C G T A C G T G C A T A T C G A G C T C T A G A C T G A C G T A G C T C G A T T G A C G T A C
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T