Information for 4-GGAATTCCCC (Motif 4)

C T A G T C A G T C G A G C T A C G A T A C G T A G T C T G A C T G A C G T A C
Reverse Opposite:
C A T G A C T G A C T G T C A G T G C A G C T A C G A T A G C T A G T C G A T C
p-value:1e-22
log p-value:-5.283e+01
Information Content per bp:1.657
Number of Target Sequences with motif60.0
Percentage of Target Sequences with motif6.85%
Number of Background Sequences with motif637.1
Percentage of Background Sequences with motif1.37%
Average Position of motif in Targets53.8 +/- 24.0bp
Average Position of motif in Background49.6 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-GGAATTCCCC-
GGGAAATCCCCN
 A C G T C T A G T C A G T C G A G C T A C G A T A C G T A G T C T G A C T G A C G T A C A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:GGAATTCCCC
GGAAATCCCC
 C T A G T C A G T C G A G C T A C G A T A C G T A G T C T G A C T G A C G T A C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:GGAATTCCCC
GGAAANCCCC
 C T A G T C A G T C G A G C T A C G A T A C G T A G T C T G A C T G A C G T A C
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:4
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-GGAATTCCCC-
GGGGATTCCCCC
 A C G T C T A G T C A G T C G A G C T A C G A T A C G T A G T C T G A C T G A C G T A C A C G T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

NFKB2/MA0778.1/Jaspar

Match Rank:5
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--GGAATTCCCC-
AGGGGATTCCCCT
 A C G T A C G T C T A G T C A G T C G A G C T A C G A T A C G T A G T C T G A C T G A C G T A C A C G T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

RELA/MA0107.1/Jaspar

Match Rank:6
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:GGAATTCCCC
GGAAATTCCC
 C T A G T C A G T C G A G C T A C G A T A C G T A G T C T G A C T G A C G T A C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.80
Offset:0
Orientation:forward strand
Alignment:GGAATTCCCC
GGAAATTCCC
 C T A G T C A G T C G A G C T A C G A T A C G T A G T C T G A C T G A C G T A C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--GGAATTCCCC-
AGGGGATTCCCCT
 A C G T A C G T C T A G T C A G T C G A G C T A C G A T A C G T A G T C T G A C T G A C G T A C A C G T
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

MZF1/MA0056.1/Jaspar

Match Rank:9
Score:0.73
Offset:5
Orientation:reverse strand
Alignment:GGAATTCCCC-
-----TCCCCA
 C T A G T C A G T C G A G C T A C G A T A C G T A G T C T G A C T G A C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GGAATTCCCC
NCTGGAATGC---
 A C G T A C G T A C G T C T A G T C A G T C G A G C T A C G A T A C G T A G T C T G A C T G A C G T A C
G A T C G T A C C G A T A C T G A C T G C G T A C G T A A C G T A C T G G A T C A C G T A C G T A C G T