Information for 2-CCACCAGGTGGNG (Motif 2)

G A T C G T A C C T G A A T G C G A T C C G T A A C T G T A C G A C G T A C T G C T A G T G A C T C A G
Reverse Opposite:
A G T C A C T G A G T C G T A C T G C A A T G C A G T C G C A T C T A G T A C G A G C T A C T G C T A G
p-value:1e-23
log p-value:-5.516e+01
Information Content per bp:1.712
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif4.61%
Number of Background Sequences with motif187.6
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets44.1 +/- 27.1bp
Average Position of motif in Background49.0 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---CCACCAGGTGGNG---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T G A T C G T A C C T G A A T G C G A T C C G T A A C T G T A C G A C G T A C T G C T A G T G A C T C A G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-CCACCAGGTGGNG------
GCCASCAGGGGGCGCYVNNG
 A C G T G A T C G T A C C T G A A T G C G A T C C G T A A C T G T A C G A C G T A C T G C T A G T G A C T C A G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---CCACCAGGTGGNG----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T G A T C G T A C C T G A A T G C G A T C C G T A A C T G T A C G A C G T A C T G C T A G T G A C T C A G A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

FIGLA/MA0820.1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCACCAGGTGGNG
--AACAGGTGNT-
 G A T C G T A C C T G A A T G C G A T C C G T A A C T G T A C G A C G T A C T G C T A G T G A C T C A G
A C G T A C G T G C T A T G C A G T A C G C T A A T C G A T C G C A G T C T A G C A T G C G A T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCACCAGGTGGNG
CACAGCAGGGGG--
 A C G T G A T C G T A C C T G A A T G C G A T C C G T A A C T G T A C G A C G T A C T G C T A G T G A C T C A G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CCACCAGGTGGNG
--AACAGATGGC-
 G A T C G T A C C T G A A T G C G A T C C G T A A C T G T A C G A C G T A C T G C T A G T G A C T C A G
A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCACCAGGTGGNG
ATGCAACAGGTGG--
 A C G T A C G T G A T C G T A C C T G A A T G C G A T C C G T A A C T G T A C G A C G T A C T G C T A G T G A C T C A G
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G A C G T A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCACCAGGTGGNG
NCCCCCCCGGGGGGN
 A C G T A C G T G A T C G T A C C T G A A T G C G A T C C G T A A C T G T A C G A C G T A C T G C T A G T G A C T C A G
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G

SCRT1/MA0743.1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCACCAGGTGGNG
GAGCAACAGGTGGTT
 A C G T A C G T G A T C G T A C C T G A A T G C G A T C C G T A A C T G T A C G A C G T A C T G C T A G T G A C T C A G
T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCACCAGGTGGNG
DCHCAGCAGGRGGCC
 A C G T A C G T G A T C G T A C C T G A A T G C G A T C C G T A A C T G T A C G A C G T A C T G C T A G T G A C T C A G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C